Variant report

Variant	rs8060163
Chromosome Location	chr16:31297146-31297147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11574632	1.00[ASN][1000 genomes]
rs11574635	1.00[ASN][1000 genomes]
rs11861251	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs12920910	1.00[ASN][1000 genomes]
rs13336235	1.00[ASN][1000 genomes]
rs41370044	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58200984	1.00[ASN][1000 genomes]
rs58352473	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58656594	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58827327	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051462	1.00[ASN][1000 genomes]
rs62051470	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051472	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051481	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62051523	1.00[ASN][1000 genomes]
rs62054769	1.00[ASN][1000 genomes]
rs72791981	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31290000-31301400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr16:31290000-31310200	Weak transcription	Spleen	Spleen
3	chr16:31293600-31299800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr16:31294600-31300000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr16:31295200-31299800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr16:31295600-31299600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr16:31296200-31297400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr16:31296600-31297200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:31296800-31297400	Enhancers	GM12878-XiMat	blood
10	chr16:31296800-31297800	Enhancers	HMEC	breast
11	chr16:31296800-31301200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr16:31296800-31308800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr16:31297000-31297800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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