Variant report

Variant	rs41382249
Chromosome Location	chr9:100841967-100841968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100841190..100843013-chr9:100847159..100849959,2	K562	blood:
2	chr9:100817966..100819958-chr9:100840027..100843917,3	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41340647	0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs41424445	1.00[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
3	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
5	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
6	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
8	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
9	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
11	chr9:100823800-100842000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:100824800-100843200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:100828600-100843200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:100828800-100843200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:100829000-100843600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:100830200-100843000	Weak transcription	NH-A	brain
17	chr9:100836800-100842800	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:100836800-100843200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:100837200-100843200	Weak transcription	Brain Angular Gyrus	brain
20	chr9:100837200-100843200	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:100837200-100843400	Weak transcription	Fetal Lung	lung
22	chr9:100837200-100844400	Weak transcription	Psoas Muscle	Psoas
23	chr9:100837400-100845200	Strong transcription	K562	blood
24	chr9:100837600-100843000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:100838200-100842600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:100838200-100852800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:100838400-100842600	Weak transcription	A549	lung
28	chr9:100838400-100843600	Strong transcription	Fetal Intestine Large	intestine
29	chr9:100838600-100842600	Weak transcription	NHDF-Ad	bronchial
30	chr9:100838600-100843000	Weak transcription	Stomach Mucosa	stomach
31	chr9:100838600-100843600	Strong transcription	Fetal Intestine Small	intestine
32	chr9:100838600-100848400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr9:100838600-100852000	Strong transcription	GM12878-XiMat	blood
34	chr9:100838800-100842800	Strong transcription	HSMM	muscle
35	chr9:100839000-100842000	Strong transcription	HSMMtube	muscle
36	chr9:100839000-100842600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:100839000-100843200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:100839000-100843200	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr9:100839000-100843600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr9:100839000-100845000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr9:100839000-100848400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:100839000-100849600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:100839000-100849800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr9:100839200-100842600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:100839200-100842600	Weak transcription	Fetal Thymus	thymus
46	chr9:100839200-100842600	Strong transcription	Osteobl	bone
47	chr9:100839200-100842800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:100839200-100843200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr9:100839200-100843200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr9:100839200-100843400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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