Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10805970	0.83[EUR][1000 genomes]
rs16883236	1.00[CEU][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs17808079	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1935531	0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs1935532	0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs2153841	0.81[EUR][1000 genomes]
rs2185772	0.83[EUR][1000 genomes]
rs2185773	0.83[EUR][1000 genomes]
rs2350364	0.83[EUR][1000 genomes]
rs2350365	0.83[EUR][1000 genomes]
rs2350367	0.83[EUR][1000 genomes]
rs2350368	0.83[EUR][1000 genomes]
rs2882398	0.83[EUR][1000 genomes]
rs34096074	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3798464	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs4288171	0.83[EUR][1000 genomes]
rs4292489	0.83[EUR][1000 genomes]
rs4323278	0.83[EUR][1000 genomes]
rs4351213	0.83[EUR][1000 genomes]
rs4398688	0.83[EUR][1000 genomes]
rs4579314	0.83[EUR][1000 genomes]
rs4613780	0.83[EUR][1000 genomes]
rs4708021	1.00[CEU][hapmap]
rs6453628	0.83[EUR][1000 genomes]
rs6905309	0.83[EUR][1000 genomes]
rs7764195	0.83[EUR][1000 genomes]
rs9343001	1.00[CEU][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9351968	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9442884	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766000-73788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73766400-73786000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73772200-73783600	Weak transcription	HSMM	muscle
5	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:73782200-73784800	Enhancers	A549	lung

Quick Search: