Variant report

Variant	rs9343001
Chromosome Location	chr6:73797164-73797165
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73792068..73794962-chr6:73796855..73798765,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10805970	0.90[EUR][1000 genomes]
rs16883236	1.00[CEU][hapmap]
rs17808079	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1819732	0.83[AFR][1000 genomes]
rs1935531	0.87[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs1935532	0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs2153841	0.88[EUR][1000 genomes]
rs2185771	0.83[AFR][1000 genomes]
rs2185772	0.90[EUR][1000 genomes]
rs2185773	0.90[EUR][1000 genomes]
rs2350364	0.90[EUR][1000 genomes]
rs2350365	0.90[EUR][1000 genomes]
rs2350367	0.90[EUR][1000 genomes]
rs2350368	0.90[EUR][1000 genomes]
rs2350370	0.83[AFR][1000 genomes]
rs2882398	0.90[EUR][1000 genomes]
rs34096074	0.90[EUR][1000 genomes]
rs3798464	1.00[CEU][hapmap]
rs41395445	1.00[CEU][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4288171	0.90[EUR][1000 genomes]
rs4292489	0.90[EUR][1000 genomes]
rs4323278	0.90[EUR][1000 genomes]
rs4351213	0.90[EUR][1000 genomes]
rs4398688	0.90[EUR][1000 genomes]
rs4566855	0.82[YRI][hapmap]
rs4579314	0.90[EUR][1000 genomes]
rs4613780	0.90[EUR][1000 genomes]
rs4706520	0.82[YRI][hapmap]
rs4708020	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4708021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6453628	0.90[EUR][1000 genomes]
rs6905309	0.90[EUR][1000 genomes]
rs6905395	0.83[AFR][1000 genomes]
rs6941990	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7752205	0.92[AFR][1000 genomes]
rs7761599	0.81[EUR][1000 genomes]
rs7764195	0.90[EUR][1000 genomes]
rs7765606	0.82[YRI][hapmap]
rs7767020	0.83[AFR][1000 genomes]
rs7774477	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9351968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9442884	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73790000-73798200	Weak transcription	NH-A	brain
7	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:73795000-73798200	Enhancers	GM12878-XiMat	blood
9	chr6:73795400-73803800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:73796200-73798000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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