Variant report

Variant	rs2350370
Chromosome Location	chr6:73784654-73784655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12191415	1.00[YRI][hapmap]
rs1819732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2185771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28551604	1.00[AMR][1000 genomes]
rs3934400	1.00[YRI][hapmap]
rs4566855	1.00[AMR][1000 genomes]
rs4566856	1.00[AMR][1000 genomes]
rs4708020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58934581	1.00[AMR][1000 genomes]
rs61692084	1.00[AMR][1000 genomes]
rs6905395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458589	1.00[AMR][1000 genomes]
rs73753221	1.00[AMR][1000 genomes]
rs73753246	1.00[AMR][1000 genomes]
rs73753264	1.00[AMR][1000 genomes]
rs73753265	1.00[AMR][1000 genomes]
rs73753268	1.00[AMR][1000 genomes]
rs7740021	1.00[AMR][1000 genomes]
rs7748047	1.00[AMR][1000 genomes]
rs7767020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9343001	0.83[AFR][1000 genomes]
rs9351968	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766000-73788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73766400-73786000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:73782200-73784800	Enhancers	A549	lung
8	chr6:73783000-73785600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:73783200-73788800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:73783200-73789200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:73783800-73789000	Weak transcription	NH-A	brain
12	chr6:73784400-73788400	Weak transcription	HSMM	muscle
13	chr6:73784600-73784800	Enhancers	NHLF	lung
14	chr6:73784600-73785800	Weak transcription	Osteobl	bone
15	chr6:73784600-73788200	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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