Variant report

Variant	rs73753221
Chromosome Location	chr6:73718565-73718566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1819732	1.00[AMR][1000 genomes]
rs2185771	1.00[AMR][1000 genomes]
rs2350370	1.00[AMR][1000 genomes]
rs28551604	1.00[AMR][1000 genomes]
rs4566855	1.00[AMR][1000 genomes]
rs4566856	1.00[AMR][1000 genomes]
rs4708020	1.00[AMR][1000 genomes]
rs58934581	1.00[AMR][1000 genomes]
rs61692084	1.00[AMR][1000 genomes]
rs6905395	1.00[AMR][1000 genomes]
rs6941990	1.00[AMR][1000 genomes]
rs73458589	1.00[AMR][1000 genomes]
rs73753246	1.00[AMR][1000 genomes]
rs73753264	1.00[AMR][1000 genomes]
rs73753265	1.00[AMR][1000 genomes]
rs73753268	1.00[AMR][1000 genomes]
rs7767020	1.00[AMR][1000 genomes]
rs7774477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73710000-73740000	Weak transcription	HMEC	breast
2	chr6:73714800-73723200	Weak transcription	GM12878-XiMat	blood
3	chr6:73715400-73719000	Strong transcription	Primary B cells from cord blood	blood
4	chr6:73716600-73718800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:73717400-73718600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73717600-73718800	Weak transcription	Aorta	Aorta
7	chr6:73717600-73719200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73717600-73720000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:73717600-73733600	Weak transcription	HSMM	muscle
10	chr6:73717800-73718600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:73717800-73721800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:73717800-73737800	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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