Variant report

Variant	rs6941990
Chromosome Location	chr6:73791007-73791008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1819732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2185771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2350370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28551604	1.00[AMR][1000 genomes]
rs4566855	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs4566856	1.00[AMR][1000 genomes]
rs4706520	0.83[YRI][hapmap]
rs4708020	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58934581	1.00[AMR][1000 genomes]
rs61692084	1.00[AMR][1000 genomes]
rs6905395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458589	1.00[AMR][1000 genomes]
rs73753221	1.00[AMR][1000 genomes]
rs73753246	1.00[AMR][1000 genomes]
rs73753264	1.00[AMR][1000 genomes]
rs73753265	1.00[AMR][1000 genomes]
rs73753268	1.00[AMR][1000 genomes]
rs7740021	1.00[AMR][1000 genomes]
rs7748047	1.00[AMR][1000 genomes]
rs7765606	0.83[YRI][hapmap]
rs7767020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774477	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9343001	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9351968	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:73786800-73795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:73787000-73796000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:73787200-73791600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:73787200-73795000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:73787400-73791800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:73788600-73791600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:73789400-73791200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:73789800-73794600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:73789800-73795000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:73790000-73791600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:73790000-73791800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:73790000-73792200	Weak transcription	A549	lung
19	chr6:73790000-73794600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:73790000-73794800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:73790000-73795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:73790000-73795000	Weak transcription	GM12878-XiMat	blood
23	chr6:73790000-73798200	Weak transcription	NH-A	brain
24	chr6:73790200-73791600	Weak transcription	HSMMtube	muscle
25	chr6:73790600-73791800	Weak transcription	HSMM	muscle
26	chr6:73791000-73794400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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