Variant report

Variant	rs7774477
Chromosome Location	chr6:73789490-73789491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73784693..73787196-chr6:73789334..73790913,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1819732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2185771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2350370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28551604	1.00[AMR][1000 genomes]
rs4566855	1.00[AMR][1000 genomes]
rs4566856	1.00[AMR][1000 genomes]
rs4708020	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58934581	1.00[AMR][1000 genomes]
rs61692084	1.00[AMR][1000 genomes]
rs6905395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941990	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458589	1.00[AMR][1000 genomes]
rs73753221	1.00[AMR][1000 genomes]
rs73753246	1.00[AMR][1000 genomes]
rs73753264	1.00[AMR][1000 genomes]
rs73753265	1.00[AMR][1000 genomes]
rs73753268	1.00[AMR][1000 genomes]
rs7740021	1.00[AMR][1000 genomes]
rs7748047	1.00[AMR][1000 genomes]
rs7767020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9343001	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9351968	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:73785800-73789800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:73786200-73790000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:73786800-73795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:73787000-73796000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:73787200-73789600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:73787200-73791600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:73787200-73795000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
15	chr6:73787400-73791800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:73788400-73790600	Enhancers	HSMM	muscle
17	chr6:73788400-73791000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:73788600-73790000	Active TSS	A549	lung
19	chr6:73788600-73790000	Enhancers	Osteobl	bone
20	chr6:73788600-73791600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:73788800-73790000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:73788800-73790000	Enhancers	NHLF	lung
23	chr6:73788800-73790200	Enhancers	HSMMtube	muscle
24	chr6:73788800-73791000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:73789000-73790000	Enhancers	HMEC	breast
26	chr6:73789200-73789600	Enhancers	Fetal Heart	heart
27	chr6:73789200-73789800	Enhancers	NHEK	skin
28	chr6:73789200-73790000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:73789200-73790000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:73789200-73790000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr6:73789400-73789600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:73789400-73789800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr6:73789400-73789800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:73789400-73789800	Flanking Active TSS	NH-A	brain
35	chr6:73789400-73790000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:73789400-73790000	Enhancers	GM12878-XiMat	blood
37	chr6:73789400-73791200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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