Variant report

Variant	rs73753264
Chromosome Location	chr6:73839775-73839776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:73326966..73327836-chr6:73839389..73839934,2	MCF-7	breast:
2	chr6:73121580..73122582-chr6:73839170..73840509,9	MCF-7	breast:
3	chr6:73325865..73326790-chr6:73839227..73840215,3	MCF-7	breast:
4	chr6:73121805..73122626-chr6:73839312..73840201,4	MCF-7	breast:
5	chr6:73325918..73327224-chr6:73839102..73840270,6	MCF-7	breast:
6	chr6:73414396..73415444-chr6:73839415..73839971,4	MCF-7	breast:
7	chr6:73324743..73325282-chr6:73839253..73840155,2	MCF-7	breast:
8	chr6:73331578..73332186-chr6:73839406..73840248,2	MCF-7	breast:
9	chr6:73121764..73122558-chr6:73839387..73840029,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1819732	1.00[AMR][1000 genomes]
rs2185771	1.00[AMR][1000 genomes]
rs2350370	1.00[AMR][1000 genomes]
rs28551604	1.00[AMR][1000 genomes]
rs4566855	1.00[AMR][1000 genomes]
rs4566856	1.00[AMR][1000 genomes]
rs4708020	1.00[AMR][1000 genomes]
rs58934581	1.00[AMR][1000 genomes]
rs61692084	1.00[AMR][1000 genomes]
rs6905395	1.00[AMR][1000 genomes]
rs6941990	1.00[AMR][1000 genomes]
rs73458589	1.00[AMR][1000 genomes]
rs73753221	1.00[AMR][1000 genomes]
rs73753246	1.00[AMR][1000 genomes]
rs73753265	1.00[AMR][1000 genomes]
rs73753268	1.00[AMR][1000 genomes]
rs7740021	1.00[AMR][1000 genomes]
rs7748047	1.00[AMR][1000 genomes]
rs7767020	1.00[AMR][1000 genomes]
rs7774477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73831200-73841600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:73831800-73843600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73832000-73841600	Weak transcription	HSMM	muscle
6	chr6:73832400-73841400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73834000-73844000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73834400-73841400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
10	chr6:73839400-73839800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:73839400-73839800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:73839400-73839800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:73839400-73839800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:73839400-73839800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:73839400-73839800	Enhancers	Fetal Heart	heart
16	chr6:73839400-73839800	Active TSS	Stomach Smooth Muscle	stomach
17	chr6:73839400-73839800	Active TSS	Osteobl	bone
18	chr6:73839400-73840000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:73839400-73840000	Enhancers	A549	lung
20	chr6:73839400-73840200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:73839400-73840200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:73839400-73840200	Enhancers	GM12878-XiMat	blood
23	chr6:73839400-73840400	Enhancers	HMEC	breast
24	chr6:73839400-73840400	Enhancers	NHEK	skin
25	chr6:73839600-73839800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:73839600-73839800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:73839600-73839800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:73839600-73839800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:73839600-73839800	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr6:73839600-73839800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:73839600-73839800	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:73839600-73839800	Bivalent Enhancer	Fetal Lung	lung
33	chr6:73839600-73839800	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr6:73839600-73839800	Enhancers	Psoas Muscle	Psoas
35	chr6:73839600-73839800	Enhancers	Rectal Smooth Muscle	rectum
36	chr6:73839600-73839800	Enhancers	HSMMtube	muscle
37	chr6:73839600-73839800	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr6:73839600-73840000	Enhancers	Primary B cells from peripheral blood	blood
39	chr6:73839600-73840000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr6:73839600-73840000	Enhancers	Brain Hippocampus Middle	brain
41	chr6:73839600-73840000	Enhancers	Pancreas	Pancrea
42	chr6:73839600-73840000	Enhancers	Stomach Mucosa	stomach
43	chr6:73839600-73840200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr6:73839600-73840200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr6:73839600-73840200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:73839600-73840200	Enhancers	Primary T cells fromperipheralblood	blood
47	chr6:73839600-73840200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:73839600-73840200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:73839600-73840200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:73839600-73840200	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links