Variant report

Variant	rs3934400
Chromosome Location	chr6:73777643-73777644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000256980	Chromatin interaction
ENSG00000203907	Chromatin interaction
ENSG00000080007	Chromatin interaction
ENSG00000235174	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000224221	Chromatin interaction
ENSG00000231332	Chromatin interaction
ENSG00000203909	Chromatin interaction
ENSG00000203908	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10455090	0.87[AFR][1000 genomes]
rs2066369	1.00[AFR][1000 genomes]
rs2350370	1.00[YRI][hapmap]
rs2882399	0.85[AFR][1000 genomes]
rs4533951	0.87[AFR][1000 genomes]
rs4708019	0.95[AFR][1000 genomes]
rs6453625	1.00[AFR][1000 genomes]
rs6907158	0.95[AFR][1000 genomes]
rs7748770	0.85[AFR][1000 genomes]
rs9293918	1.00[AFR][1000 genomes]
rs9341397	0.95[AFR][1000 genomes]
rs9341401	0.95[AFR][1000 genomes]
rs9350483	0.95[AFR][1000 genomes]
rs9351964	0.87[AFR][1000 genomes]
rs9359012	0.90[AFR][1000 genomes]
rs9442878	0.95[AFR][1000 genomes]
rs9446830	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766000-73788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73766400-73786000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73772200-73783600	Weak transcription	HSMM	muscle
5	chr6:73773000-73781400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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