Variant report

Variant	rs9351964
Chromosome Location	chr6:73755450-73755451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10455090	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2066369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2882399	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3934400	0.87[AFR][1000 genomes]
rs4533951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4708019	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6453625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748770	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9293918	0.88[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9341397	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9341401	0.83[AFR][1000 genomes]
rs9350483	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9442878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446830	0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9351964	RASIP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73743000-73772000	Weak transcription	HSMM	muscle
2	chr6:73746400-73759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73749000-73765200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73750200-73764000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73751400-73759000	Weak transcription	Aorta	Aorta
6	chr6:73752200-73757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73752600-73760800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:73753600-73774800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73754200-73755600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:73754400-73755800	Enhancers	Fetal Heart	heart
11	chr6:73754600-73755600	Enhancers	HSMMtube	muscle
12	chr6:73754800-73757000	Weak transcription	Primary T cells from cord blood	blood
13	chr6:73754800-73766200	Weak transcription	Primary B cells from cord blood	blood
14	chr6:73755200-73755600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:73755200-73755600	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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