Variant report

Variant	rs9341397
Chromosome Location	chr6:73764944-73764945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10455090	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12202514	1.00[CHB][hapmap]
rs1981298	1.00[CHB][hapmap]
rs2066369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2882399	1.00[AMR][1000 genomes]
rs3934400	0.95[AFR][1000 genomes]
rs4533951	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4708019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6453625	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7748770	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs9293918	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9341401	0.90[AFR][1000 genomes]
rs9350483	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9351964	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9359012	0.86[AFR][1000 genomes]
rs9442875	1.00[CHB][hapmap]
rs9442878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446830	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv970142	chr6:73764850-73769561	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73743000-73772000	Weak transcription	HSMM	muscle
2	chr6:73749000-73765200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:73753600-73774800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73754800-73766200	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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