Variant report

Variant	rs41407744
Chromosome Location	chr19:35798422-35798423
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35796764..35800582-chr19:36132788..36136056,3	K562	blood:
2	chr19:35798397..35800415-chr19:35842184..35843828,2	MCF-7	breast:
3	chr19:35757193..35760230-chr19:35795583..35800096,4	K562	blood:
4	chr19:35797829..35800128-chr19:35823862..35825668,2	MCF-7	breast:
5	chr19:35794875..35797641-chr19:35798078..35800124,2	MCF-7	breast:
6	chr19:35780282..35782569-chr19:35797611..35799728,2	MCF-7	breast:
7	chr19:35794837..35799903-chr19:35800719..35807404,10	MCF-7	breast:
8	chr19:35753841..35756119-chr19:35797821..35799359,2	MCF-7	breast:
9	chr19:35759321..35763199-chr19:35795656..35798701,4	MCF-7	breast:
10	chr19:35646046..35647977-chr19:35796625..35798576,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105698	Chromatin interaction
ENSG00000126266	Chromatin interaction
ENSG00000105699	Chromatin interaction
ENSG00000105672	Chromatin interaction
ENSG00000105695	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1052400	1.00[AMR][1000 genomes]
rs2269756	1.00[ASN][1000 genomes]
rs2285449	1.00[ASN][1000 genomes]
rs73588856	1.00[AMR][1000 genomes]
rs73588864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
9	nsv9711	chr19:35797190-35805196	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
2	chr19:35791400-35798800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr19:35792800-35801400	Genic enhancers	Brain Hippocampus Middle	brain
4	chr19:35794400-35810000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr19:35794600-35799400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr19:35795000-35800400	Enhancers	HepG2	liver
7	chr19:35795200-35798800	Weak transcription	Spleen	Spleen
8	chr19:35796200-35799200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:35796200-35799600	Enhancers	Primary B cells from peripheral blood	blood
10	chr19:35796800-35800600	Enhancers	Ovary	ovary
11	chr19:35796800-35801000	Weak transcription	Fetal Thymus	thymus
12	chr19:35797000-35799000	Enhancers	GM12878-XiMat	blood
13	chr19:35797000-35800800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:35797200-35799400	Enhancers	Primary hematopoietic stem cells	blood
15	chr19:35797200-35800000	Enhancers	Primary B cells from cord blood	blood
16	chr19:35797200-35802200	Weak transcription	Brain Anterior Caudate	brain
17	chr19:35797600-35804000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:35797800-35798800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:35797800-35799000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr19:35797800-35800000	Enhancers	Fetal Lung	lung
21	chr19:35797800-35800200	Enhancers	Fetal Kidney	kidney
22	chr19:35797800-35800800	Genic enhancers	Brain Substantia Nigra	brain
23	chr19:35797800-35809600	Weak transcription	Brain Angular Gyrus	brain
24	chr19:35798000-35801400	Enhancers	Fetal Muscle Trunk	muscle
25	chr19:35798000-35801800	Enhancers	Fetal Stomach	stomach
26	chr19:35798000-35802600	Enhancers	Placenta	Placenta
27	chr19:35798200-35799000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr19:35798200-35799200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr19:35798200-35801400	Enhancers	Fetal Muscle Leg	muscle
30	chr19:35798200-35802800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr19:35798200-35811400	Weak transcription	Liver	Liver
32	chr19:35798400-35800000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links