Variant report

Variant	rs73588856
Chromosome Location	chr19:35619739-35619740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35619055..35622692-chr19:35622870..35625258,3	K562	blood:

Variant related genes	Relation type
ENSG00000153902	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1052400	1.00[AMR][1000 genomes]
rs41407744	1.00[AMR][1000 genomes]
rs73588864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911614	chr19:35570307-35648365	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
3	nsv911615	chr19:35577870-35648365	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
4	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
5	nsv911617	chr19:35587791-35642297	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35614400-35620000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:35615800-35625800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr19:35616000-35619800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr19:35616000-35619800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr19:35616000-35623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr19:35616200-35626200	Weak transcription	Psoas Muscle	Psoas
7	chr19:35616200-35627400	Weak transcription	Lung	lung
8	chr19:35616600-35620600	Enhancers	HepG2	liver
9	chr19:35616800-35628200	Weak transcription	Gastric	stomach
10	chr19:35617000-35621600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr19:35617000-35622800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr19:35617000-35623400	Weak transcription	Brain Angular Gyrus	brain
13	chr19:35617200-35626000	Weak transcription	Right Ventricle	heart
14	chr19:35617400-35625000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr19:35617800-35622200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:35618000-35620400	Weak transcription	Brain Substantia Nigra	brain
17	chr19:35618000-35621600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr19:35618000-35622800	Enhancers	Fetal Intestine Large	intestine
19	chr19:35618000-35623000	Weak transcription	Brain Anterior Caudate	brain
20	chr19:35618000-35623000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr19:35618000-35623200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr19:35618000-35624400	Weak transcription	Adipose Nuclei	Adipose
23	chr19:35618000-35624800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:35618200-35620400	Weak transcription	Brain Hippocampus Middle	brain
25	chr19:35618200-35621600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr19:35618200-35622800	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr19:35618200-35623000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr19:35618400-35623200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr19:35619200-35624600	Weak transcription	Esophagus	oesophagus
30	chr19:35619400-35619800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr19:35619400-35622800	Enhancers	Colonic Mucosa	Colon
32	chr19:35619400-35622800	Enhancers	Fetal Intestine Small	intestine
33	chr19:35619600-35622000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr19:35619600-35626800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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