The 2.0 version of rSNPBase

Variant report

Variant rs41409850
Chromosome Location chr2:46990210-46990211
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:46976200-46990400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr2:46981200-46991000 Weak transcription H9 Cell Line embryonic stem cell
3 chr2:46981400-47006800 Weak transcription Psoas Muscle Psoas
4 chr2:46981800-46993200 Weak transcription Fetal Heart heart
5 chr2:46983200-46990400 Strong transcription Osteobl bone
6 chr2:46984400-46998600 Weak transcription Fetal Brain Male brain
7 chr2:46985200-46991400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr2:46985600-46998600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr2:46985600-47008200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:46987000-46993000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr2:46987200-46995000 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr2:46987200-46996200 Weak transcription Stomach Smooth Muscle stomach
13 chr2:46987200-46997800 Weak transcription Liver Liver
14 chr2:46987400-46990400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr2:46987400-46990400 Weak transcription Esophagus oesophagus
16 chr2:46987400-46990400 Weak transcription Rectal Smooth Muscle rectum
17 chr2:46987400-46991000 Weak transcription Ovary ovary
18 chr2:46987400-46991000 Weak transcription A549 lung
19 chr2:46987400-46991200 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr2:46987400-46991400 Weak transcription NHLF lung
21 chr2:46987400-46991600 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr2:46987400-46992800 Weak transcription Primary hematopoietic stem cells blood
23 chr2:46987400-46992800 Weak transcription HSMMtube muscle
24 chr2:46987400-46993200 Weak transcription Duodenum Mucosa Duodenum
25 chr2:46987400-46993400 Weak transcription Pancreas Pancrea
26 chr2:46987400-46997000 Weak transcription Fetal Lung lung
27 chr2:46987400-46997400 Weak transcription Fetal Stomach stomach
28 chr2:46987400-46997600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr2:46987400-46997600 Weak transcription Fetal Intestine Small intestine
30 chr2:46987400-47005600 Weak transcription Fetal Muscle Leg muscle
31 chr2:46987400-47005600 Weak transcription Left Ventricle heart
32 chr2:46987600-46990800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:46987600-46991000 Weak transcription Primary B cells from cord blood blood
34 chr2:46987600-46991400 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr2:46987600-46993800 Weak transcription Primary T cells from cord blood blood
36 chr2:46987600-46995000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr2:46987600-46997000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr2:46987600-46997200 Weak transcription HSMM muscle
39 chr2:46987600-46997400 Weak transcription Fetal Intestine Large intestine
40 chr2:46987600-47006000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr2:46987800-46997200 Weak transcription NH-A brain
42 chr2:46988200-46991000 Weak transcription Muscle Satellite Cultured Cells --
43 chr2:46988200-46991000 Weak transcription HepG2 liver
44 chr2:46988200-46993400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr2:46988200-46993800 Weak transcription Brain Inferior Temporal Lobe brain
46 chr2:46988200-46997400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr2:46988600-46990800 Strong transcription NHDF-Ad bronchial
48 chr2:46989400-46991000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr2:46989400-46997200 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr2:46989800-46990400 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015