Variant report

Variant	rs9808073
Chromosome Location	chr2:47010454-47010455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10164807	1.00[AMR][1000 genomes]
rs10172110	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs10189994	1.00[AMR][1000 genomes]
rs10190001	1.00[AMR][1000 genomes]
rs10190187	1.00[AMR][1000 genomes]
rs11125088	1.00[AMR][1000 genomes]
rs13399713	1.00[AMR][1000 genomes]
rs13402553	1.00[AMR][1000 genomes]
rs13418951	1.00[AMR][1000 genomes]
rs28702871	1.00[AMR][1000 genomes]
rs41409850	1.00[AMR][1000 genomes]
rs41483445	1.00[AMR][1000 genomes]
rs6711782	1.00[AMR][1000 genomes]
rs6714964	1.00[AMR][1000 genomes]
rs6716072	1.00[AMR][1000 genomes]
rs6759784	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6760403	1.00[AMR][1000 genomes]
rs73926574	1.00[AMR][1000 genomes]
rs73926585	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7566758	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs7573534	1.00[AMR][1000 genomes]
rs9807932	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs9808427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
5	nsv457352	chr2:47004788-47325973	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv581749	chr2:47004788-47325973	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47005400-47012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:47008000-47011800	Weak transcription	A549	lung
3	chr2:47008200-47021000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:47008400-47010800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:47009000-47011800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:47009600-47010800	Weak transcription	Ovary	ovary
7	chr2:47009800-47011200	Weak transcription	Right Atrium	heart
8	chr2:47009800-47025200	Weak transcription	Right Ventricle	heart
9	chr2:47010000-47011400	Weak transcription	Left Ventricle	heart
10	chr2:47010000-47015000	Weak transcription	Psoas Muscle	Psoas

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