Variant report

Variant	rs4141096
Chromosome Location	chr14:71167675-71167676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71106741..71108658-chr14:71166734..71168674,2	MCF-7	breast:
2	chr14:71105323..71106828-chr14:71166793..71168664,2	MCF-7	breast:
3	chr14:71129098..71131237-chr14:71165694..71167978,2	MCF-7	breast:
4	chr14:71167340..71170123-chr14:71176805..71178816,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245466	Chromatin interaction
ENSG00000133985	Chromatin interaction
ENSG00000259115	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12589041	0.83[CHB][hapmap]
rs12590084	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902839	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7145643	0.83[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4141096	ADAM21	cis	parietal	SCAN
rs4141096	FAM71D	cis	parietal	SCAN
rs4141096	ACOT6	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
3	chr14:71162800-71169800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:71164600-71168800	Enhancers	Spleen	Spleen
5	chr14:71165400-71172600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:71165400-71180000	Weak transcription	Aorta	Aorta
7	chr14:71165600-71167800	Weak transcription	Placenta	Placenta
8	chr14:71165600-71173000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:71165600-71173600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:71166000-71169800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr14:71166200-71172600	Weak transcription	Stomach Mucosa	stomach
12	chr14:71166400-71168000	Enhancers	Right Atrium	heart
13	chr14:71166800-71168800	Active TSS	Esophagus	oesophagus
14	chr14:71167000-71169400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr14:71167000-71173800	Weak transcription	Gastric	stomach
16	chr14:71167200-71168000	Enhancers	Adipose Nuclei	Adipose
17	chr14:71167200-71168400	Enhancers	Left Ventricle	heart
18	chr14:71167400-71168000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:71167600-71167800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:71167600-71168000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr14:71167600-71168000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr14:71167600-71168400	Enhancers	Lung	lung
23	chr14:71167600-71172600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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