Variant report

Variant	rs7145643
Chromosome Location	chr14:71172236-71172237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71132827..71135159-chr14:71171125..71172879,2	MCF-7	breast:
2	chr14:71106871..71109388-chr14:71171457..71173747,2	MCF-7	breast:
3	chr14:71131310..71133408-chr14:71170654..71173445,2	MCF-7	breast:
4	chr14:71127446..71130650-chr14:71171405..71173659,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259115	Chromatin interaction
ENSG00000245466	Chromatin interaction
ENSG00000133985	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11158878	0.86[ASN][1000 genomes]
rs11158879	0.88[ASN][1000 genomes]
rs12589041	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12590084	0.88[ASN][1000 genomes]
rs4141096	0.83[CHB][hapmap]
rs4902839	0.89[ASN][1000 genomes]
rs4902840	0.90[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
3	chr14:71165400-71172600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:71165400-71180000	Weak transcription	Aorta	Aorta
5	chr14:71165600-71173000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:71165600-71173600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:71166200-71172600	Weak transcription	Stomach Mucosa	stomach
8	chr14:71167000-71173800	Weak transcription	Gastric	stomach
9	chr14:71167600-71172600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:71168000-71172800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:71168000-71173800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:71168400-71174000	Weak transcription	Lung	lung
13	chr14:71168400-71181000	Weak transcription	Left Ventricle	heart
14	chr14:71168800-71173000	Weak transcription	Esophagus	oesophagus
15	chr14:71168800-71173000	Weak transcription	Spleen	Spleen
16	chr14:71169200-71172800	Weak transcription	Pancreas	Pancrea
17	chr14:71169400-71172400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr14:71169600-71172800	Weak transcription	Placenta	Placenta
19	chr14:71169800-71173800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr14:71169800-71174000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr14:71171600-71172800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:71172200-71176600	Enhancers	HepG2	liver

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