Variant report

Variant	rs4141369
Chromosome Location	chr7:117638539-117638540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000077063	Chromatin interaction
ENSG00000001626	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10276404	0.81[JPT][hapmap]
rs10953859	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1319470	0.89[ASN][1000 genomes]
rs1859032	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[MKK][hapmap];0.94[YRI][hapmap];0.93[ASN][1000 genomes]
rs2402296	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[MKK][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2402297	0.86[ASN][1000 genomes]
rs6943059	0.81[JPT][hapmap];0.82[YRI][hapmap]
rs929218	0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117633400-117645400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:117635600-117640600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:117636400-117639800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:117636600-117639200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:117637000-117639000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:117637800-117639600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:117638000-117639200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:117638200-117638600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:117638200-117638600	Enhancers	A549	lung
10	chr7:117638200-117638600	Flanking Active TSS	NHEK	skin
11	chr7:117638200-117638800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:117638200-117639000	Enhancers	NH-A	brain
13	chr7:117638400-117639000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:117638400-117639400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:117638400-117639800	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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