Variant report

Variant	rs1859032
Chromosome Location	chr7:117631978-117631979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000077063	Chromatin interaction
ENSG00000001626	Chromatin interaction
ENSG00000198898	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1013279	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10276404	0.88[CEU][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10953859	0.86[ASN][1000 genomes]
rs1319470	0.85[ASN][1000 genomes]
rs2402296	0.82[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap];0.86[ASN][1000 genomes]
rs2402297	0.83[ASN][1000 genomes]
rs4141369	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[MKK][hapmap];0.94[YRI][hapmap];0.93[ASN][1000 genomes]
rs6943059	0.88[CEU][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6947612	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6968967	0.88[EUR][1000 genomes]
rs7777391	0.87[EUR][1000 genomes]
rs929218	0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs957290	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1859032	FOXP2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117623600-117632800	Weak transcription	Fetal Kidney	kidney
2	chr7:117630600-117632000	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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