Variant report

Variant	rs1013279
Chromosome Location	chr7:117604223-117604224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10276404	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859032	0.91[CEU][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4141369	0.82[YRI][hapmap]
rs6943059	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6947612	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6968967	0.85[EUR][1000 genomes]
rs7777391	0.85[EUR][1000 genomes]
rs957290	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117601200-117605200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:117601200-117605200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:117601200-117605400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:117601200-117605400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:117601200-117605400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:117601400-117605000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:117601400-117605000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:117601800-117605400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:117602000-117604400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:117602200-117605200	Enhancers	Fetal Lung	lung
11	chr7:117602800-117605400	Enhancers	Fetal Kidney	kidney
12	chr7:117603000-117605000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:117603400-117604400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:117603400-117604800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:117604000-117604800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:117604000-117605000	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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