Variant report

Variant	rs4141387
Chromosome Location	chr4:149865244-149865245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11734988	0.92[ASN][1000 genomes]
rs12233660	0.92[ASN][1000 genomes]
rs12374234	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12510376	0.90[EUR][1000 genomes]
rs1523018	0.89[EUR][1000 genomes]
rs17025417	0.92[ASN][1000 genomes]
rs17025447	0.92[ASN][1000 genomes]
rs2285540	0.92[ASN][1000 genomes]
rs4379043	0.92[ASN][1000 genomes]
rs55753811	0.92[ASN][1000 genomes]
rs56062942	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149864800-149867400	Enhancers	Fetal Brain Male	brain
2	chr4:149865000-149865600	Enhancers	Fetal Brain Female	brain
3	chr4:149865000-149868400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:149865200-149865400	Bivalent Enhancer	Left Ventricle	heart
5	chr4:149865200-149867200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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