Variant report

Variant	rs56062942
Chromosome Location	chr4:149848126-149848127
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11734988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374234	0.99[ASN][1000 genomes]
rs12505474	0.96[EUR][1000 genomes]
rs12505478	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17025335	0.88[EUR][1000 genomes]
rs17025417	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025447	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285540	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34334982	0.96[EUR][1000 genomes]
rs4141387	0.92[ASN][1000 genomes]
rs4379043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511981	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55753811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149846400-149848600	Enhancers	Fetal Muscle Leg	muscle
2	chr4:149847000-149848800	Enhancers	Fetal Brain Male	brain
3	chr4:149847200-149848600	Enhancers	Brain Germinal Matrix	brain
4	chr4:149847400-149848200	Enhancers	Stomach Smooth Muscle	stomach
5	chr4:149847600-149848400	Enhancers	Fetal Stomach	stomach
6	chr4:149847800-149848200	Enhancers	Left Ventricle	heart
7	chr4:149847800-149848200	Enhancers	Lung	lung
8	chr4:149847800-149848200	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:149847800-149848200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:149847800-149848400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:149847800-149848600	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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