Variant report

Variant	rs12505474
Chromosome Location	chr4:149802403-149802404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11734988	0.96[EUR][1000 genomes]
rs12233660	0.96[EUR][1000 genomes]
rs12505478	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12510376	0.95[ASN][1000 genomes]
rs1523018	0.95[ASN][1000 genomes]
rs17025335	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17025417	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17025447	0.95[EUR][1000 genomes]
rs2285540	0.97[EUR][1000 genomes]
rs34334982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4379043	0.96[EUR][1000 genomes]
rs4511981	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55753811	0.96[EUR][1000 genomes]
rs56062942	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149794800-149802600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:149794800-149803000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:149801200-149802800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:149801200-149804200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:149801400-149804000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:149801400-149804200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:149801600-149802800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:149801600-149802800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:149801800-149803600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:149802000-149802600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr4:149802000-149802800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:149802200-149802800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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