Variant report

Variant	rs17025335
Chromosome Location	chr4:149773708-149773709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11734988	0.88[EUR][1000 genomes]
rs12233660	0.88[EUR][1000 genomes]
rs12505474	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12505478	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510376	0.99[ASN][1000 genomes]
rs1523018	0.99[ASN][1000 genomes]
rs17025417	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17025447	0.87[EUR][1000 genomes]
rs2285540	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34334982	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4379043	0.88[EUR][1000 genomes]
rs4511981	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55753811	0.88[EUR][1000 genomes]
rs56062942	0.88[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149759200-149775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:149770800-149774400	Enhancers	Duodenum Mucosa	Duodenum
3	chr4:149771200-149775000	Enhancers	Stomach Mucosa	stomach
4	chr4:149771400-149774000	Weak transcription	Small Intestine	intestine
5	chr4:149772200-149774200	Enhancers	HUVEC	blood vessel
6	chr4:149772600-149775400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:149773000-149774200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:149773200-149773800	Enhancers	NHEK	skin
9	chr4:149773400-149774000	Enhancers	Placenta	Placenta
10	chr4:149773400-149775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:149773600-149773800	Enhancers	Fetal Intestine Small	intestine
12	chr4:149773600-149773800	Enhancers	Psoas Muscle	Psoas
13	chr4:149773600-149774000	Enhancers	Pancreas	Pancrea
14	chr4:149773600-149774000	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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