Variant report

Variant	rs4142016
Chromosome Location	chr10:98026075-98026076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98025106..98027142-chr10:98028676..98031247,2	K562	blood:
2	chr10:98019198..98021083-chr10:98025208..98027242,2	MCF-7	breast:
3	chr10:98025433..98027161-chr10:98027788..98030439,2	K562	blood:
4	chr10:98018546..98020304-chr10:98024707..98027759,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10748668	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17386635	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17387939	1.00[CHB][hapmap]
rs17479230	1.00[CHB][hapmap]
rs1870169	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1870171	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1902708	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2861575	1.00[CHB][hapmap]
rs55668627	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55769428	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6584062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318809	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr10:98015400-98026200	Genic enhancers	Primary B cells from cord blood	blood
4	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:98015800-98026200	Weak transcription	Esophagus	oesophagus
6	chr10:98019800-98028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:98020000-98029400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:98021000-98029800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
9	chr10:98022600-98026800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:98023600-98031800	Weak transcription	Small Intestine	intestine
11	chr10:98023800-98026200	Weak transcription	Colonic Mucosa	Colon
12	chr10:98023800-98026600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:98023800-98032000	Weak transcription	Spleen	Spleen
14	chr10:98024200-98026200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:98024600-98029200	Weak transcription	Placenta	Placenta
16	chr10:98025000-98026200	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:98025400-98029400	Enhancers	Stomach Mucosa	stomach
18	chr10:98025600-98026800	Genic enhancers	Fetal Intestine Large	intestine
19	chr10:98025600-98027600	Enhancers	Pancreas	Pancrea
20	chr10:98025800-98026200	Enhancers	Liver	Liver
21	chr10:98025800-98026200	Enhancers	Brain Germinal Matrix	brain
22	chr10:98025800-98028600	Weak transcription	Fetal Kidney	kidney
23	chr10:98026000-98026800	Genic enhancers	Fetal Intestine Small	intestine
24	chr10:98026000-98027400	Enhancers	Gastric	stomach
25	chr10:98026000-98027400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:98026000-98027600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:98026000-98027800	Enhancers	HMEC	breast

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