Variant report

Variant	rs17387939
Chromosome Location	chr10:98111897-98111898
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10736104	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12245169	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs17386635	1.00[CHB][hapmap]
rs17479230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923701	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1923702	0.85[CEU][hapmap]
rs2861575	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2901991	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814222	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41291624	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4142016	1.00[CHB][hapmap]
rs4919003	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4919005	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56148171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584063	1.00[CHB][hapmap]
rs7091125	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72829509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72829512	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98105000-98113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98106200-98112600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:98106200-98113000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
5	chr10:98106600-98112400	Weak transcription	Brain Substantia Nigra	brain
6	chr10:98106600-98112400	Weak transcription	Dnd41	blood
7	chr10:98109600-98112000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:98109600-98113000	Weak transcription	Thymus	Thymus
9	chr10:98110800-98114200	Enhancers	Brain Angular Gyrus	brain
10	chr10:98111200-98114200	Enhancers	Fetal Intestine Small	intestine
11	chr10:98111400-98112000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:98111400-98112000	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:98111400-98112400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:98111400-98112800	Enhancers	Liver	Liver
15	chr10:98111400-98113200	Enhancers	Brain Hippocampus Middle	brain
16	chr10:98111600-98112400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:98111800-98112600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:98111800-98114000	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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