Variant report

Variant	rs4919003
Chromosome Location	chr10:98110250-98110251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10736104	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17387939	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17479230	0.83[EUR][1000 genomes]
rs1923701	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2901991	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4919005	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56148171	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7091125	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72829509	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72829512	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98105000-98113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98106200-98112600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:98106200-98113000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
5	chr10:98106600-98112400	Weak transcription	Brain Substantia Nigra	brain
6	chr10:98106600-98112400	Weak transcription	Dnd41	blood
7	chr10:98107400-98110800	Weak transcription	Brain Angular Gyrus	brain
8	chr10:98109600-98111400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:98109600-98112000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:98109600-98113000	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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