Variant report

Variant	rs1923701
Chromosome Location	chr10:98123615-98123616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10736104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245169	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs17387939	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17388474	1.00[CHB][hapmap]
rs17479230	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1923702	0.85[CEU][hapmap]
rs2861575	0.81[CEU][hapmap]
rs2901991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3814222	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41291624	0.87[EUR][1000 genomes]
rs4919003	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4919005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56148171	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7091125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72829509	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72829512	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98117000-98123800	Weak transcription	Right Atrium	heart
3	chr10:98117000-98134400	Weak transcription	Thymus	Thymus
4	chr10:98118800-98130200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:98120000-98125000	Weak transcription	Brain Angular Gyrus	brain
6	chr10:98120400-98125200	Weak transcription	Brain Substantia Nigra	brain
7	chr10:98121200-98125000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:98121200-98126000	Weak transcription	Brain Anterior Caudate	brain
9	chr10:98121400-98125000	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:98123000-98124200	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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