Variant report

Variant	rs3814222
Chromosome Location	chr10:98127504-98127505
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10736104	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12245169	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17387939	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17388474	0.82[ASN][1000 genomes]
rs17479230	0.85[EUR][1000 genomes]
rs1923701	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2901991	0.85[EUR][1000 genomes]
rs41291624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4919005	0.87[EUR][1000 genomes]
rs56148171	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7091125	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72829509	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72829512	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98117000-98134400	Weak transcription	Thymus	Thymus
2	chr10:98118800-98130200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:98125000-98129000	Enhancers	Brain Cingulate Gyrus	brain
4	chr10:98125000-98129000	Enhancers	Brain Hippocampus Middle	brain
5	chr10:98125200-98128800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr10:98126000-98127600	Enhancers	Brain Anterior Caudate	brain
7	chr10:98126200-98129600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:98126600-98127600	Enhancers	Aorta	Aorta
9	chr10:98126600-98127800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:98126600-98129600	Weak transcription	Placenta	Placenta
11	chr10:98126800-98130400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:98127000-98129600	Weak transcription	Hela-S3	cervix
13	chr10:98127200-98127600	Enhancers	Psoas Muscle	Psoas
14	chr10:98127200-98127600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:98127200-98127600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:98127200-98127800	Enhancers	Brain Angular Gyrus	brain
17	chr10:98127200-98128000	Weak transcription	Left Ventricle	heart
18	chr10:98127200-98128000	Enhancers	Right Ventricle	heart
19	chr10:98127400-98133800	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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