Variant report

Variant	rs56148171
Chromosome Location	chr10:98105618-98105619
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10736104	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12245169	0.84[EUR][1000 genomes]
rs17387939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17479230	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923701	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2861575	1.00[ASN][1000 genomes]
rs2901991	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814222	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41291624	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4919003	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4919005	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7091125	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72829509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72829512	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98104000-98106600	ZNF genes & repeats	Dnd41	blood
2	chr10:98104200-98105800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr10:98104600-98105800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:98104800-98105800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr10:98105000-98106000	Strong transcription	Brain Hippocampus Middle	brain
6	chr10:98105000-98106200	ZNF genes & repeats	Thymus	Thymus
7	chr10:98105000-98113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:98105400-98106200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:98105400-98106200	ZNF genes & repeats	Brain Angular Gyrus	brain
10	chr10:98105400-98106600	ZNF genes & repeats	Brain Substantia Nigra	brain
11	chr10:98105600-98105800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr10:98105600-98105800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:98105600-98106200	ZNF genes & repeats	Aorta	Aorta
14	chr10:98105600-98106200	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr10:98105600-98106200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr10:98105600-98106400	ZNF genes & repeats	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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