Variant report

Variant	rs4142901
Chromosome Location	chr13:89247036-89247037
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1572182	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4142902	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4379940	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4619261	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4627190	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6492194	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9301379	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9515057	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9515060	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9515080	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9521343	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9521347	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9521348	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9521351	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1051177	chr13:89219432-89359036	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89247000-89247400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links