Variant report

Variant	rs9515080
Chromosome Location	chr13:89237815-89237816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1572182	0.80[ASN][1000 genomes]
rs4142901	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4142902	0.80[ASN][1000 genomes]
rs4379940	0.82[ASN][1000 genomes]
rs4619261	0.85[AFR][1000 genomes]
rs4627190	0.80[ASN][1000 genomes]
rs6492194	0.82[ASN][1000 genomes]
rs9301379	0.80[ASN][1000 genomes]
rs9515057	0.80[ASN][1000 genomes]
rs9515060	0.82[ASN][1000 genomes]
rs9521343	0.80[ASN][1000 genomes]
rs9521347	0.80[ASN][1000 genomes]
rs9521348	0.80[ASN][1000 genomes]
rs9521351	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1051177	chr13:89219432-89359036	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89237600-89238000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:89237600-89238800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr13:89237600-89238800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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