Variant report

Variant	rs4144449
Chromosome Location	chr13:65665023-65665024
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1113141	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1606439	0.83[EUR][1000 genomes]
rs1890283	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2137512	0.81[ASN][1000 genomes]
rs4453355	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4883744	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6562380	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6562381	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7318981	0.90[ASN][1000 genomes]
rs7330513	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7335620	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7985378	0.83[EUR][1000 genomes]
rs7998849	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9317458	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9317462	1.00[JPT][hapmap]
rs9528849	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9528889	0.84[ASN][1000 genomes]
rs9540298	0.84[ASN][1000 genomes]
rs9571306	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598859	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs986812	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs986813	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045954	chr13:65495013-65842827	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1046706	chr13:65495013-66210226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541809	chr13:65495013-66210226	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv900373	chr13:65495897-65775294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv915632	chr13:65531495-65834877	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1037329	chr13:65583733-65673656	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv2761796	chr13:65617000-65688686	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv900377	chr13:65620889-65746182	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65662800-65667400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:65664600-65669400	Weak transcription	Fetal Lung	lung

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