Variant report

Variant	rs9540298
Chromosome Location	chr13:65567319-65567320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1113141	0.90[ASN][1000 genomes]
rs1340812	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1890283	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2137512	0.90[ASN][1000 genomes]
rs4144449	0.84[ASN][1000 genomes]
rs4453355	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4883744	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61953880	0.85[EUR][1000 genomes]
rs61953883	0.88[EUR][1000 genomes]
rs6562380	0.90[ASN][1000 genomes]
rs6562381	0.90[ASN][1000 genomes]
rs7318981	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7319969	0.88[EUR][1000 genomes]
rs7324694	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7329489	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7330513	0.90[ASN][1000 genomes]
rs7335620	0.90[ASN][1000 genomes]
rs7981527	0.82[EUR][1000 genomes]
rs7984878	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7985378	0.93[ASN][1000 genomes]
rs7998849	0.90[ASN][1000 genomes]
rs9317458	0.90[ASN][1000 genomes]
rs9317462	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9317463	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9528849	0.90[ASN][1000 genomes]
rs9528876	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9528889	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9540266	0.83[EUR][1000 genomes]
rs9540269	0.88[EUR][1000 genomes]
rs9540270	0.88[EUR][1000 genomes]
rs9540271	0.88[EUR][1000 genomes]
rs9540319	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9540330	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9571306	0.90[ASN][1000 genomes]
rs9598859	0.90[ASN][1000 genomes]
rs9598861	0.87[EUR][1000 genomes]
rs9598878	0.83[EUR][1000 genomes]
rs9598879	0.88[EUR][1000 genomes]
rs9598880	0.88[EUR][1000 genomes]
rs9598892	1.00[CEU][hapmap]
rs9598940	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9598945	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs986812	0.90[ASN][1000 genomes]
rs986813	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900368	chr13:65398639-65577032	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv832635	chr13:65419368-65574767	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900369	chr13:65423068-65577032	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900371	chr13:65434926-65568081	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900372	chr13:65449535-65577032	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1045954	chr13:65495013-65842827	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1046706	chr13:65495013-66210226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv541809	chr13:65495013-66210226	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv900373	chr13:65495897-65775294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900375	chr13:65501587-65577032	Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv915632	chr13:65531495-65834877	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65566800-65567600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:65567000-65567600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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