Variant report

Variant	rs61953883
Chromosome Location	chr13:65503405-65503406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:65501243..65504224-chr17:41399641..41402005,2	K562	blood:
2	chr13:65502724..65504224-chr17:41400395..41402648,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1113141	0.83[ASN][1000 genomes]
rs1340812	0.84[EUR][1000 genomes]
rs1890283	0.82[EUR][1000 genomes]
rs2137512	0.83[ASN][1000 genomes]
rs4453355	0.82[EUR][1000 genomes]
rs4883744	0.83[EUR][1000 genomes]
rs61953880	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6562380	0.83[ASN][1000 genomes]
rs6562381	0.83[ASN][1000 genomes]
rs7318981	0.87[EUR][1000 genomes]
rs7319969	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324694	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7329489	0.82[EUR][1000 genomes]
rs7330513	0.83[ASN][1000 genomes]
rs7335620	0.83[ASN][1000 genomes]
rs7981527	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7984878	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7985378	0.86[ASN][1000 genomes]
rs7998849	0.83[ASN][1000 genomes]
rs9317458	0.83[ASN][1000 genomes]
rs9317463	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9528838	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9528839	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9528849	0.83[ASN][1000 genomes]
rs9528876	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9528889	0.84[EUR][1000 genomes]
rs9540249	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9540266	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9540269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540270	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9540271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9540298	0.88[EUR][1000 genomes]
rs9540319	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9540330	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9571306	0.83[ASN][1000 genomes]
rs9598859	0.83[ASN][1000 genomes]
rs9598861	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598878	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598880	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598940	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9598945	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs986812	0.83[ASN][1000 genomes]
rs986813	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900364	chr13:65381616-65542385	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900366	chr13:65385600-65512989	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900367	chr13:65385600-65558413	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900368	chr13:65398639-65577032	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv832635	chr13:65419368-65574767	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900369	chr13:65423068-65577032	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900370	chr13:65434926-65542385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900371	chr13:65434926-65568081	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900372	chr13:65449535-65577032	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1045954	chr13:65495013-65842827	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1046706	chr13:65495013-66210226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv541809	chr13:65495013-66210226	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv900373	chr13:65495897-65775294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv900374	chr13:65501587-65549877	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv900375	chr13:65501587-65577032	Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65502400-65503800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:65502400-65504400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr13:65502600-65503800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr13:65502800-65503600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:65502800-65504400	Enhancers	NH-A	brain
6	chr13:65503000-65503600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:65503000-65503600	Enhancers	NHDF-Ad	bronchial
8	chr13:65503000-65503800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:65503000-65503800	Enhancers	A549	lung
10	chr13:65503000-65503800	Enhancers	GM12878-XiMat	blood
11	chr13:65503000-65503800	Flanking Active TSS	Hela-S3	cervix
12	chr13:65503000-65504200	Enhancers	HUVEC	blood vessel
13	chr13:65503200-65503600	Flanking Active TSS	HMEC	breast
14	chr13:65503200-65504200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:65503200-65504600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:65503400-65503800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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