Variant report

Variant	rs41448845
Chromosome Location	chr13:49364888-49364889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12184837	0.97[ASN][1000 genomes]
rs17072181	0.82[ASN][1000 genomes]
rs2147808	0.85[ASN][1000 genomes]
rs56686141	0.97[ASN][1000 genomes]
rs56828527	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59643165	0.97[ASN][1000 genomes]
rs7319904	0.88[ASN][1000 genomes]
rs73480212	0.88[ASN][1000 genomes]
rs73480214	0.88[ASN][1000 genomes]
rs73480251	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73484311	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73484314	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs895967	0.88[ASN][1000 genomes]
rs895968	0.97[ASN][1000 genomes]
rs9591205	0.82[ASN][1000 genomes]
rs9591208	0.82[ASN][1000 genomes]
rs9591210	0.88[ASN][1000 genomes]
rs9591211	0.88[ASN][1000 genomes]
rs9595989	0.82[ASN][1000 genomes]
rs9595990	0.82[ASN][1000 genomes]
rs9595991	0.85[ASN][1000 genomes]
rs9595993	0.82[ASN][1000 genomes]
rs9595994	0.88[ASN][1000 genomes]
rs9595996	0.88[ASN][1000 genomes]
rs9596009	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832606	chr13:49352212-49506009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49357400-49365200	Weak transcription	NH-A	brain
2	chr13:49358200-49365200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr13:49358200-49365400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:49358200-49365600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:49358400-49365200	Weak transcription	NHLF	lung
6	chr13:49358600-49365000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:49360800-49365600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:49364400-49366800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:49364400-49366800	Enhancers	Hela-S3	cervix
10	chr13:49364400-49367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:49364600-49365000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:49364800-49366800	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links