Variant report
Variant | rs9595994 |
---|---|
Chromosome Location | chr13:49336214-49336215 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12184837 | 0.91[ASN][1000 genomes] |
rs17072179 | 0.80[ASN][1000 genomes] |
rs17072181 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs2147808 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs28445170 | 0.80[ASN][1000 genomes] |
rs41448845 | 0.88[ASN][1000 genomes] |
rs56686141 | 0.91[ASN][1000 genomes] |
rs56828527 | 0.91[ASN][1000 genomes] |
rs59643165 | 0.91[ASN][1000 genomes] |
rs6561478 | 0.80[EUR][1000 genomes] |
rs7319904 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7327830 | 0.80[ASN][1000 genomes] |
rs73480212 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73480214 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73480251 | 0.91[ASN][1000 genomes] |
rs73484311 | 0.91[ASN][1000 genomes] |
rs73484314 | 0.91[ASN][1000 genomes] |
rs895967 | 1.00[ASN][1000 genomes] |
rs895968 | 0.91[ASN][1000 genomes] |
rs9591207 | 0.80[ASN][1000 genomes] |
rs9591208 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs9591209 | 0.80[ASN][1000 genomes] |
rs9591210 | 1.00[ASN][1000 genomes] |
rs9591211 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs9595985 | 0.80[ASN][1000 genomes] |
rs9595986 | 0.80[ASN][1000 genomes] |
rs9595987 | 0.80[ASN][1000 genomes] |
rs9595989 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs9595990 | 0.83[ASN][1000 genomes] |
rs9595993 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
rs9595996 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9596009 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1049117 | chr13:49089476-49928945 | Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
2 | nsv832605 | chr13:49171305-49344970 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
3 | esv2758327 | chr13:49283983-49472517 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | esv2759936 | chr13:49283983-49472517 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1036621 | chr13:49310529-49346405 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv1049066 | chr13:49316146-49346405 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv1044086 | chr13:49331713-49350131 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:49331200-49341800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr13:49334000-49336600 | Enhancers | Fetal Intestine Small | intestine |