Variant report

Variant	rs6561478
Chromosome Location	chr13:49316146-49316147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12184704	0.95[ASN][1000 genomes]
rs12184705	0.95[ASN][1000 genomes]
rs17072105	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17072181	0.94[EUR][1000 genomes]
rs1998511	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2147808	0.80[EUR][1000 genomes]
rs56959802	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57042574	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57186324	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58150329	0.87[EUR][1000 genomes]
rs60424010	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61027580	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7319904	0.80[EUR][1000 genomes]
rs73478310	0.95[ASN][1000 genomes]
rs73478325	0.93[EUR][1000 genomes]
rs73478365	0.87[ASN][1000 genomes]
rs73480212	0.80[EUR][1000 genomes]
rs73480214	0.80[EUR][1000 genomes]
rs9591202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9591203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9591204	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9591205	0.90[EUR][1000 genomes]
rs9591206	0.95[ASN][1000 genomes]
rs9591208	0.94[EUR][1000 genomes]
rs9591211	1.00[CHB][hapmap];1.00[GIH][hapmap]
rs9595975	0.87[EUR][1000 genomes]
rs9595977	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9595978	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9595989	0.94[EUR][1000 genomes]
rs9595991	0.90[EUR][1000 genomes]
rs9595993	0.89[CHD][hapmap];0.94[GIH][hapmap]
rs9595994	0.80[EUR][1000 genomes]
rs9595996	0.80[EUR][1000 genomes]
rs985466	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9888525	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1036621	chr13:49310529-49346405	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1049066	chr13:49316146-49346405	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49311800-49317000	Enhancers	Dnd41	blood
2	chr13:49314000-49316400	Enhancers	Fetal Lung	lung
3	chr13:49315000-49316400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:49315200-49316400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:49315200-49316400	Enhancers	Thymus	Thymus
6	chr13:49315200-49317000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:49315400-49316400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:49315600-49316400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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