Variant report

Variant	rs41464948
Chromosome Location	chr11:75327712-75327713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75320436..75322582-chr11:75325180..75328802,3	K562	blood:
2	chr11:75318997..75321031-chr11:75326821..75329463,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11236476	0.84[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs17134161	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
3	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:75314000-75328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:75319600-75329600	Weak transcription	Fetal Stomach	stomach
8	chr11:75323400-75337200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:75324200-75328400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:75324400-75328200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:75324400-75328200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:75325400-75329800	Weak transcription	Lung	lung
13	chr11:75326000-75327800	Enhancers	Fetal Lung	lung
14	chr11:75326000-75328400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:75326200-75328200	Enhancers	Fetal Brain Female	brain
16	chr11:75326200-75328400	Enhancers	Fetal Brain Male	brain
17	chr11:75326400-75327800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:75326800-75329600	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:75326800-75343600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:75327000-75328200	Weak transcription	Brain Angular Gyrus	brain
21	chr11:75327000-75338400	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:75327200-75328200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:75327200-75328200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:75327600-75327800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:75327600-75327800	Enhancers	Brain Inferior Temporal Lobe	brain

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