Variant report

Variant	rs4149466
Chromosome Location	chr7:65817700-65817701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11560207	0.83[AMR][1000 genomes]
rs11561738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13311614	0.81[EUR][1000 genomes]
rs2859839	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3823606	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4149458	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4149459	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4149460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4149462	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4149464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4149465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9647880	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv508458	chr7:65724222-65842639	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1034195	chr7:65743409-65828266	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
6	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65805200-65843600	Weak transcription	Aorta	Aorta
2	chr7:65809600-65818600	Weak transcription	Liver	Liver
3	chr7:65813400-65821200	Weak transcription	Fetal Stomach	stomach
4	chr7:65813800-65820600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:65814000-65843800	Weak transcription	Brain Angular Gyrus	brain
6	chr7:65814200-65823800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:65814800-65818200	Weak transcription	Placenta	Placenta
8	chr7:65815000-65824600	Weak transcription	Lung	lung
9	chr7:65817000-65817800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:65817000-65818000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:65817000-65818000	Flanking Active TSS	NHEK	skin
12	chr7:65817000-65819000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:65817000-65819000	Enhancers	Adipose Nuclei	Adipose
14	chr7:65817000-65819400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:65817000-65821000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:65817000-65843400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:65817200-65817800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:65817200-65817800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:65817200-65818000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:65817200-65818000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:65817200-65818000	Enhancers	Pancreas	Pancrea
22	chr7:65817200-65818000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr7:65817200-65818200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:65817200-65818400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:65817200-65819000	Enhancers	Esophagus	oesophagus
26	chr7:65817200-65819400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:65817200-65820000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:65817200-65824400	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:65817400-65818200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:65817400-65818600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:65817400-65821000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:65817400-65821600	Weak transcription	Fetal Lung	lung
33	chr7:65817400-65823600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:65817400-65823800	Weak transcription	Spleen	Spleen
35	chr7:65817400-65824600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:65817400-65825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:65817400-65842600	Weak transcription	Gastric	stomach
38	chr7:65817600-65817800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:65817600-65818000	Enhancers	NHLF	lung
40	chr7:65817600-65818000	Enhancers	Osteobl	bone
41	chr7:65817600-65818200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr7:65817600-65818800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:65817600-65818800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:65817600-65820000	Weak transcription	Brain Anterior Caudate	brain
45	chr7:65817600-65820600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:65817600-65820600	Weak transcription	NHDF-Ad	bronchial
47	chr7:65817600-65820800	Weak transcription	HepG2	liver
48	chr7:65817600-65820800	Weak transcription	NH-A	brain
49	chr7:65817600-65821000	Weak transcription	Fetal Intestine Large	intestine
50	chr7:65817600-65821000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links