Variant report

Variant	rs11560207
Chromosome Location	chr7:65600463-65600464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65549975..65551527-chr7:65598587..65601084,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11561738	0.83[AMR][1000 genomes]
rs12234230	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735144	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs3823606	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4149458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs4149459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs4149460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4149462	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs4149464	0.83[AMR][1000 genomes]
rs4149465	0.83[AMR][1000 genomes]
rs4149466	0.83[AMR][1000 genomes]
rs58976916	0.83[ASN][1000 genomes]
rs9647880	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv971489	chr7:65590579-65614004	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65580600-65600600	Weak transcription	Aorta	Aorta
2	chr7:65580800-65606800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:65581000-65617200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:65581600-65604800	Weak transcription	Colonic Mucosa	Colon
5	chr7:65582400-65608200	Weak transcription	Fetal Brain Male	brain
6	chr7:65585400-65604400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:65587800-65606600	Weak transcription	Stomach Mucosa	stomach
8	chr7:65590800-65613400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:65591600-65607200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:65594000-65603400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:65594600-65604000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:65594600-65604000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:65594600-65610800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:65594800-65606200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr7:65594800-65612200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:65594800-65614400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr7:65595000-65604000	Weak transcription	HUVEC	blood vessel
18	chr7:65595000-65614400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr7:65595000-65614600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:65595000-65615200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:65595200-65600600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:65595200-65602000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:65595200-65602200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:65595200-65602400	Strong transcription	Fetal Intestine Large	intestine
25	chr7:65595200-65605000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:65595200-65606200	Strong transcription	Fetal Muscle Leg	muscle
27	chr7:65595200-65613600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:65595200-65614000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:65595200-65622000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:65595400-65603600	Strong transcription	Fetal Thymus	thymus
31	chr7:65595600-65603400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:65595600-65623200	Strong transcription	Dnd41	blood
33	chr7:65595600-65623800	Strong transcription	Primary T cells from cord blood	blood
34	chr7:65595800-65601400	Strong transcription	Stomach Smooth Muscle	stomach
35	chr7:65595800-65603400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:65595800-65603600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:65595800-65605600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:65595800-65608200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:65595800-65617200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr7:65595800-65620000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr7:65596200-65600600	Strong transcription	NHDF-Ad	bronchial
42	chr7:65596200-65601800	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr7:65596200-65602600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:65596400-65604400	Strong transcription	HSMM	muscle
45	chr7:65596600-65606400	Weak transcription	Gastric	stomach
46	chr7:65596600-65607200	Weak transcription	Right Ventricle	heart
47	chr7:65596800-65606800	Weak transcription	Ovary	ovary
48	chr7:65597000-65603200	Strong transcription	Fetal Brain Female	brain
49	chr7:65597000-65606400	Weak transcription	Pancreas	Pancrea
50	chr7:65597400-65606800	Weak transcription	Psoas Muscle	Psoas

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