Variant report

Variant	rs58976916
Chromosome Location	chr7:65537648-65537649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:65537640-65537790	GM12867	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65536863..65539073-chr7:65564586..65566634,2	MCF-7	breast:
2	chr7:65536010..65538329-chr7:65539255..65541774,2	MCF-7	breast:

Variant related genes	Relation type
ASL	TF binding region
ENSG00000205596	TF binding region
ENSG00000126522	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11560207	0.83[ASN][1000 genomes]
rs11561738	0.83[AMR][1000 genomes]
rs12234230	0.83[ASN][1000 genomes]
rs2279903	1.00[AMR][1000 genomes]
rs3735144	0.92[AMR][1000 genomes]
rs4149458	0.83[AMR][1000 genomes]
rs4149459	0.83[AMR][1000 genomes]
rs4149462	0.83[AMR][1000 genomes]
rs4149464	0.83[AMR][1000 genomes]
rs57737362	1.00[AMR][1000 genomes]
rs58600265	1.00[AMR][1000 genomes]
rs59697660	1.00[AMR][1000 genomes]
rs60220916	1.00[AMR][1000 genomes]
rs60748223	1.00[AMR][1000 genomes]
rs61240358	1.00[AMR][1000 genomes]
rs61665304	0.92[AMR][1000 genomes]
rs73368796	1.00[AMR][1000 genomes]
rs73370623	0.92[AMR][1000 genomes]
rs73370679	0.92[AMR][1000 genomes]
rs73370687	1.00[AMR][1000 genomes]
rs73372603	1.00[AMR][1000 genomes]
rs73372614	1.00[AMR][1000 genomes]
rs73372618	1.00[AMR][1000 genomes]
rs73372623	1.00[AMR][1000 genomes]
rs73372662	1.00[AMR][1000 genomes]
rs73372665	1.00[AMR][1000 genomes]
rs73372688	1.00[AMR][1000 genomes]
rs73372692	1.00[AMR][1000 genomes]
rs73372693	1.00[AMR][1000 genomes]
rs9638231	1.00[AMR][1000 genomes]
rs9638481	1.00[AMR][1000 genomes]
rs9647880	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv888325	chr7:65474919-65575893	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv984546	chr7:65531382-65556631	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65534800-65540400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:65535600-65540400	Weak transcription	NHDF-Ad	bronchial
3	chr7:65535800-65540000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:65535800-65540400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:65536400-65537800	Enhancers	HepG2	liver
6	chr7:65536800-65540200	Weak transcription	K562	blood
7	chr7:65537400-65537800	Enhancers	Fetal Thymus	thymus
8	chr7:65537600-65537800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:65537600-65537800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:65537600-65540200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:65537600-65540200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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