Variant report

Variant	rs73372692
Chromosome Location	chr7:65479979-65479980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:65446857..65448801-chr7:65479763..65482688,2	MCF-7	breast:
2	chr7:65214161..65216144-chr7:65479047..65481990,2	MCF-7	breast:
3	chr7:65476501..65479059-chr7:65479264..65481901,2	K562	blood:

Variant related genes	Relation type
ENSG00000228409	Chromatin interaction
ENSG00000169919	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2279903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735144	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57737362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58600265	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58976916	1.00[AMR][1000 genomes]
rs59697660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60220916	1.00[AMR][1000 genomes]
rs60748223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61240358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61665304	0.92[AMR][1000 genomes]
rs73368796	1.00[AMR][1000 genomes]
rs73370623	0.92[AMR][1000 genomes]
rs73370679	0.92[AMR][1000 genomes]
rs73370687	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73372603	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73372614	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73372618	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73372623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73372662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9638231	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9638481	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1025494	chr7:65402301-65515606	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv538906	chr7:65402301-65515606	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888325	chr7:65474919-65575893	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65449200-65480400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:65476400-65480400	Weak transcription	Gastric	stomach
3	chr7:65476800-65480600	Weak transcription	Hela-S3	cervix
4	chr7:65479000-65480400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:65479200-65480200	Weak transcription	Fetal Intestine Large	intestine
6	chr7:65479200-65480400	Weak transcription	HepG2	liver
7	chr7:65479200-65480600	Weak transcription	Adipose Nuclei	Adipose
8	chr7:65479400-65480400	Weak transcription	Rectal Mucosa Donor 31	rectum

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