Variant report

Variant	rs41506544
Chromosome Location	chr13:94903749-94903750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1012693	1.00[CHD][hapmap]
rs10467338	0.85[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1333246	0.81[LWK][hapmap]
rs16949639	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs17196177	1.00[CHD][hapmap]
rs519840	1.00[CHD][hapmap]
rs61964491	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7322001	0.85[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7325235	1.00[CHD][hapmap]
rs7331837	1.00[CHD][hapmap]
rs9589938	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94900400-94904000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:94902200-94904000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:94902200-94904000	Weak transcription	NHDF-Ad	bronchial
4	chr13:94902200-94904200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:94902400-94904000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:94902400-94904000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:94902400-94904000	Weak transcription	HSMMtube	muscle
8	chr13:94902400-94904200	Weak transcription	HSMM	muscle
9	chr13:94902400-94904200	Weak transcription	Osteobl	bone
10	chr13:94902800-94903800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:94903400-94904600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:94903400-94905400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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