Variant report

Variant	rs7325235
Chromosome Location	chr13:94982174-94982175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1012693	1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap]
rs17196177	1.00[CHD][hapmap]
rs41506544	1.00[CHD][hapmap]
rs519840	1.00[CHD][hapmap]
rs7318977	0.80[AMR][1000 genomes]
rs7322001	1.00[CHD][hapmap]
rs7331837	1.00[CHD][hapmap]
rs9516399	0.80[AMR][1000 genomes]
rs9516400	0.81[AMR][1000 genomes]
rs9524445	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7325235	TGDS	cis	parietal	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94973000-94982200	Weak transcription	Pancreas	Pancrea
2	chr13:94976000-94983200	Enhancers	HSMMtube	muscle
3	chr13:94976200-94983200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:94976600-94984000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr13:94978200-94982600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:94979200-94989600	Enhancers	Fetal Muscle Leg	muscle
7	chr13:94979400-94983000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:94979400-94988600	Enhancers	Fetal Stomach	stomach
9	chr13:94979800-94982600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:94979800-94996800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:94980000-94984000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr13:94980200-94982600	Weak transcription	Fetal Heart	heart
13	chr13:94980200-94983800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr13:94980200-94984000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:94980400-94982200	Weak transcription	HUVEC	blood vessel
16	chr13:94980400-94982400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr13:94980400-94982600	Enhancers	Primary T cells from cord blood	blood
18	chr13:94980400-94982800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr13:94980400-94983200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr13:94980400-94983600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr13:94980400-94983800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr13:94980400-94983800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr13:94980400-94983800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr13:94980400-94984000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr13:94980400-95000600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:94980600-94982800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr13:94980800-94982200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr13:94980800-94982200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr13:94980800-94983000	Enhancers	NHLF	lung
30	chr13:94980800-94983600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr13:94981000-94982200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr13:94981000-94982200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr13:94981000-94982800	Enhancers	Brain Hippocampus Middle	brain
34	chr13:94981000-94982800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr13:94981000-94983000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr13:94981000-94983000	Enhancers	HepG2	liver
37	chr13:94981000-94984000	Enhancers	Esophagus	oesophagus
38	chr13:94981200-94982200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:94981200-94982200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr13:94981200-94982800	Weak transcription	Small Intestine	intestine
41	chr13:94981200-94983800	Bivalent Enhancer	Fetal Thymus	thymus
42	chr13:94981400-94982200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr13:94981400-94982600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr13:94981400-94983000	Enhancers	Adipose Nuclei	Adipose
45	chr13:94981400-94983000	Enhancers	NH-A	brain
46	chr13:94981400-94983000	Enhancers	NHDF-Ad	bronchial
47	chr13:94981600-94982200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr13:94981600-94982400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:94981600-94982600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr13:94981600-94982800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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