Variant report

Variant	rs415291
Chromosome Location	chr19:22235307-22235308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:22235134-22235621	GM12892	blood:	n/a	n/a
2	MXI1	chr19:22234820-22235864	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr19:22235181-22235497	K562	blood:	n/a	n/a
4	POLR2A	chr19:22235086-22235672	MCF-7	breast:	n/a	n/a
5	POLR2A	chr19:22235088-22235649	K562	blood:	n/a	n/a
6	TBL1XR1	chr19:22235144-22235483	K562	blood:	n/a	n/a
7	CBX3	chr19:22234952-22235406	K562	blood:	n/a	n/a
8	NFYA	chr19:22235024-22235377	K562	blood:	n/a	chr19:22235229-22235243
9	ELF1	chr19:22235036-22235514	K562	blood:	n/a	chr19:22235265-22235278 chr19:22235502-22235514 chr19:22235266-22235277 chr19:22235266-22235277 chr19:22235267-22235276
10	POLR2A	chr19:22235058-22235706	K562	blood:	n/a	n/a
11	HEY1	chr19:22235272-22235442	HepG2	liver:	n/a	n/a
12	IRF1	chr19:22235079-22235486	K562	blood:	n/a	n/a
13	ELF1	chr19:22234999-22235563	MCF-7	breast:	n/a	chr19:22235265-22235278 chr19:22235502-22235514 chr19:22235266-22235277 chr19:22235266-22235277 chr19:22235267-22235276
14	JUND	chr19:22235087-22235504	K562	blood:	n/a	chr19:22235438-22235449 chr19:22235233-22235242
15	POLR2A	chr19:22235098-22235667	MCF-7	breast:	n/a	n/a
16	ELF1	chr19:22234960-22235593	MCF-7	breast:	n/a	chr19:22235265-22235278 chr19:22235502-22235514 chr19:22235266-22235277 chr19:22235266-22235277 chr19:22235267-22235276
17	TAF1	chr19:22235278-22235436	H1-hESC	embryonic stem cell:	n/a	n/a
18	ZMIZ1	chr19:22235242-22235452	K562	blood:	n/a	n/a
19	POLR2A	chr19:22235097-22235630	HL-60	blood:	n/a	n/a
20	SIN3AK20	chr19:22235252-22235426	HepG2	liver:	n/a	n/a
21	PBX3	chr19:22234937-22235335	SK-N-SH	brain:	n/a	chr19:22235164-22235173
22	ELF1	chr19:22235124-22235403	HepG2	liver:	n/a	chr19:22235265-22235278 chr19:22235266-22235277 chr19:22235266-22235277 chr19:22235267-22235276
23	E2F6	chr19:22235184-22235325	K562	blood:	n/a	chr19:22235276-22235284 chr19:22235276-22235284 chr19:22235276-22235283
24	PBX3	chr19:22234973-22235426	SK-N-SH	brain:	n/a	chr19:22235164-22235173
25	IRF1	chr19:22235080-22235420	K562	blood:	n/a	n/a
26	RFX5	chr19:22235142-22235351	K562	blood:	n/a	n/a
27	POLR2A	chr19:22234949-22235456	K562	blood:	n/a	n/a
28	HEY1	chr19:22235069-22235837	K562	blood:	n/a	n/a
29	NFYB	chr19:22235030-22235443	K562	blood:	n/a	chr19:22235229-22235243
30	TAF1	chr19:22235206-22235399	SK-N-SH	brain:	n/a	n/a
31	POLR2A	chr19:22235043-22235674	MCF-7	breast:	n/a	n/a
32	YY1	chr19:22235245-22235726	K562	blood:	n/a	chr19:22235594-22235604 chr19:22235600-22235611 chr19:22235595-22235603 chr19:22235582-22235604 chr19:22235602-22235616
33	MAX	chr19:22234955-22235644	MCF-7	breast:	n/a	n/a
34	POLR2A	chr19:22235296-22235413	H1-hESC	embryonic stem cell:	n/a	n/a
35	REST	chr19:22235143-22235550	HL-60	blood:	n/a	n/a
36	CHD2	chr19:22235124-22235488	K562	blood:	n/a	chr19:22235183-22235193
37	POLR2A	chr19:22235142-22235528	GM12878	blood:	n/a	n/a
38	POLR2A	chr19:22235097-22235633	GM12892	blood:	n/a	n/a
39	PML	chr19:22235088-22235477	K562	blood:	n/a	n/a
40	HEY1	chr19:22235081-22235726	K562	blood:	n/a	n/a
41	TBP	chr19:22235080-22235648	K562	blood:	n/a	n/a
42	TAF7	chr19:22235235-22235373	K562	blood:	n/a	n/a
43	FOS	chr19:22235073-22235405	K562	blood:	n/a	chr19:22235233-22235242
44	POLR2A	chr19:22234962-22235536	K562	blood:	n/a	n/a
45	POLR2A	chr19:22235209-22235489	H1-hESC	embryonic stem cell:	n/a	n/a
46	POLR2A	chr19:22235278-22235469	GM12878	blood:	n/a	n/a
47	POLR2A	chr19:22235299-22235426	A549	lung:	n/a	n/a
48	POLR2A	chr19:22235267-22235500	GM12878	blood:	n/a	n/a
49	POLR2A	chr19:22235241-22235475	ProgFib	skin:	n/a	n/a
50	GABPA	chr19:22235040-22235417	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:22235281-22235331	HEK293	kidney:	embryo
2	chr19:22235281-22235331	HCM	heart:	n/a
3	chr19:22235281-22235331	NHDF-neo	bronchial:	n/a
4	chr19:22235281-22235331	BE2_C	brain:	n/a
5	chr19:22235281-22235331	AG09319	gingival:	n/a
6	chr19:22235281-22235331	HEEpiC	esophagus:	n/a
7	chr19:22235272-22235322	SK-N-SH	brain:	n/a
8	chr19:22235281-22235331	H1-hESC	embryonic stem cell:	embryo
9	chr19:22235272-22235322	Hela-S3	cervix:	n/a
10	chr19:22235281-22235331	RPTEC	kidney:	n/a
11	chr19:22235281-22235331	SK-N-SH_RA	brain:	n/a
12	chr19:22235281-22235331	HCT-116	colon:	n/a
13	chr19:22235281-22235331	NH-A	brain:	n/a
14	chr19:22235281-22235331	NHBE	bronchial:	n/a
15	chr19:22235272-22235322	SKMC	muscle:	n/a
16	chr19:22235281-22235331	Hepatocyte	liver:	n/a
17	chr19:22235272-22235322	HEEpiC	esophagus:	n/a
18	chr19:22235281-22235331	HCPEpiC	choroid plexus:	n/a
19	chr19:22235281-22235331	HL-60	blood:	n/a
20	chr19:22235272-22235322	NHBE	bronchial:	n/a
21	chr19:22235272-22235322	Hepatocyte	liver:	n/a
22	chr19:22235281-22235331	HRE	kidney:	n/a
23	chr19:22235272-22235322	T-47D	breast:	n/a
24	chr19:22235272-22235322	HRCEpiC	kidney:	n/a
25	chr19:22235272-22235322	HepG2	liver:	n/a
26	chr19:22235272-22235322	BJ	skin:	n/a
27	chr19:22235272-22235322	Jurkat	blood:	n/a
28	chr19:22235272-22235322	NT2-D1	testis:	n/a
29	chr19:22235272-22235322	PANC-1	pancreas:	n/a
30	chr19:22235281-22235331	Caco-2	colon:	n/a
31	chr19:22235272-22235322	SAEC	small airway:	n/a
32	chr19:22235272-22235322	NH-A	brain:	n/a
33	chr19:22235281-22235331	HIPEpiC	eye:	n/a
34	chr19:22235272-22235322	HRPEpiC	eye:	n/a
35	chr19:22235281-22235331	SKMC	muscle:	n/a
36	chr19:22235272-22235322	A549	lung:	n/a
37	chr19:22235281-22235331	SAEC	small airway:	n/a
38	chr19:22235272-22235322	IMR90	lung:	fetal
39	chr19:22235281-22235331	PFSK-1	brain:	n/a
40	chr19:22235281-22235331	LNCaP	prostate:	n/a
41	chr19:22235281-22235331	HepG2	liver:	n/a
42	chr19:22235281-22235331	GM12878	blood:	n/a
43	chr19:22235272-22235322	HMEC	breast:	n/a
44	chr19:22235281-22235331	AG04449	skin:	fetal
45	chr19:22235281-22235331	GM12892	blood:	n/a
46	chr19:22235272-22235322	NHDF-neo	bronchial:	n/a
47	chr19:22235281-22235331	ovcar-3	ovarian:	n/a
48	chr19:22235281-22235331	HAEpiC	amniotic membrane:	n/a
49	chr19:22235272-22235322	RPTEC	kidney:	n/a
50	chr19:22235272-22235322	CMK	blood:	n/a

Variant related genes	Relation type
ENSG00000269199	TF binding region
ZNF257	TF binding region
ZNF257	CpG island
ENSG00000269199	CpG island

Extended variants
information (count: 173 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10401697	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10401922	0.93[YRI][hapmap]
rs10404669	0.84[AFR][1000 genomes]
rs10405613	0.84[AFR][1000 genomes]
rs10405673	0.83[AFR][1000 genomes]
rs10406119	0.83[AFR][1000 genomes]
rs10406485	0.80[AFR][1000 genomes]
rs10406551	0.84[AFR][1000 genomes]
rs10406553	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs10406653	0.82[AFR][1000 genomes]
rs10407173	0.82[AFR][1000 genomes]
rs10407250	0.83[AFR][1000 genomes]
rs10408150	0.84[AFR][1000 genomes]
rs10412953	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs10413784	0.84[AFR][1000 genomes]
rs10414685	0.81[AFR][1000 genomes]
rs10414861	0.84[AFR][1000 genomes]
rs10415794	0.84[AFR][1000 genomes]
rs10416159	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10417285	0.84[AFR][1000 genomes]
rs10419184	0.80[AFR][1000 genomes]
rs10419899	0.80[EUR][1000 genomes]
rs10420019	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs10420042	0.87[YRI][hapmap]
rs10422289	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs10423114	0.82[AFR][1000 genomes]
rs11670558	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1849000	0.86[AMR][1000 genomes]
rs1849001	0.86[AMR][1000 genomes]
rs1849003	0.81[AMR][1000 genomes]
rs1849006	0.83[AMR][1000 genomes]
rs1859092	0.81[AMR][1000 genomes]
rs1859093	0.86[AMR][1000 genomes]
rs1987570	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1987974	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1987975	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1988427	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1988501	1.00[CEU][hapmap]
rs2007506	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2043315	0.85[YRI][hapmap]
rs2043316	0.82[AFR][1000 genomes]
rs2043317	0.82[AFR][1000 genomes]
rs2079062	0.83[AMR][1000 genomes]
rs2079064	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2097733	0.81[AMR][1000 genomes]
rs2106870	0.87[EUR][1000 genomes]
rs2158107	0.83[AMR][1000 genomes]
rs2163835	0.84[AFR][1000 genomes]
rs2163836	0.84[AFR][1000 genomes]
rs2163837	0.84[AFR][1000 genomes]
rs2188971	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2214296	0.81[AMR][1000 genomes]
rs2214297	1.00[CEU][hapmap]
rs2214301	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2262908	0.91[AMR][1000 genomes]
rs2359810	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2359812	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2359813	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2359814	0.82[EUR][1000 genomes]
rs2359815	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2359833	0.84[AFR][1000 genomes]
rs2522089	0.81[AMR][1000 genomes]
rs2522090	0.86[AMR][1000 genomes]
rs2522093	0.81[AMR][1000 genomes]
rs2522094	0.83[AMR][1000 genomes]
rs2522095	0.86[AMR][1000 genomes]
rs2522096	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs2522101	0.81[AMR][1000 genomes]
rs2522103	0.86[AMR][1000 genomes]
rs2666438	0.85[AMR][1000 genomes]
rs2666440	0.86[AMR][1000 genomes]
rs2666442	0.84[AMR][1000 genomes]
rs2666448	0.85[AMR][1000 genomes]
rs2666449	0.81[AMR][1000 genomes]
rs2666450	0.81[AMR][1000 genomes]
rs2666453	0.86[AMR][1000 genomes]
rs28822164	0.84[AFR][1000 genomes]
rs28857211	0.84[AFR][1000 genomes]
rs28894669	0.84[AFR][1000 genomes]
rs366863	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387343	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs394457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399990	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408312	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408687	0.81[CHB][hapmap]
rs411020	0.81[CHB][hapmap]
rs416312	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs417066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs417628	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs422344	0.81[CHB][hapmap]
rs423284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs423926	0.96[CEU][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4257328	0.84[AFR][1000 genomes]
rs430614	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431346	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431474	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436194	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4378732	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4510150	0.84[AFR][1000 genomes]
rs4542784	0.84[AFR][1000 genomes]
rs4592778	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4932723	1.00[CEU][hapmap]
rs507994	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548059	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6511305	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6511306	0.83[EUR][1000 genomes]
rs6511307	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6511308	0.83[EUR][1000 genomes]
rs6511314	0.85[YRI][hapmap]
rs6511315	0.82[AFR][1000 genomes]
rs6511316	0.84[AFR][1000 genomes]
rs6511321	0.80[YRI][hapmap]
rs7247121	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7247147	0.82[AFR][1000 genomes]
rs7247228	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs7248305	0.82[AFR][1000 genomes]
rs7248488	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7249472	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7250905	0.82[AFR][1000 genomes]
rs7251660	0.81[AFR][1000 genomes]
rs7251884	0.84[AFR][1000 genomes]
rs7252023	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs7252550	0.84[AFR][1000 genomes]
rs7258834	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7259971	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs73019876	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8101183	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs8103214	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8103518	0.84[AFR][1000 genomes]
rs8104144	0.81[AFR][1000 genomes]
rs8104630	0.84[AFR][1000 genomes]
rs8108152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs8108160	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8108535	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8108651	0.82[AFR][1000 genomes]
rs8108807	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8111955	0.87[EUR][1000 genomes]
rs8112395	0.87[EUR][1000 genomes]
rs9304993	1.00[CEU][hapmap]
rs9653142	0.82[AFR][1000 genomes]
rs9653156	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9653157	0.82[AFR][1000 genomes]
rs9973249	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063115	chr19:21782104-22528039	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv911424	chr19:21798441-22471156	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv911425	chr19:21841379-22338142	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv833785	chr19:22082143-22263312	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1058678	chr19:22084265-22288686	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1059225	chr19:22084265-22301003	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2754060	chr19:22086241-22567144	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv432039	chr19:22086260-22704860	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	esv3384540	chr19:22089182-22316805	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv3326382	chr19:22112592-22509135	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	esv3392637	chr19:22135121-22332040	ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv961196	chr19:22142802-22258858	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv3514246	chr19:22145480-22348690	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv3514247	chr19:22145480-22348690	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv3495704	chr19:22149379-22352547	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	esv3495705	chr19:22149379-22352547	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv469674	chr19:22154515-22344992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv436253	chr19:22188479-22385212	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	esv3360126	chr19:22209871-23199213	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
20	esv3507723	chr19:22209960-22315161	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	esv3507724	chr19:22209960-22315161	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	esv3333410	chr19:22213338-23199725	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
23	nsv911434	chr19:22215457-22438069	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	esv3424104	chr19:22223429-22436512	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv1064904	chr19:22229835-22408495	Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
26	nsv543951	chr19:22229835-22408495	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
27	nsv911435	chr19:22233509-22317148	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs415291	AC003973.1	cis	Thyroid	GTEx
rs415291	AC003973.1	cis	Artery Tibial	GTEx

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22234200-22236600	Active TSS	K562	blood
2	chr19:22234600-22235600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:22234600-22235800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr19:22234600-22236000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:22234600-22236200	Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr19:22234600-22236200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr19:22234800-22235400	Active TSS	Adipose Nuclei	Adipose
8	chr19:22234800-22235400	ZNF genes & repeats	Fetal Brain Female	brain
9	chr19:22234800-22235400	Active TSS	Placenta	Placenta
10	chr19:22234800-22235800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr19:22234800-22235800	Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr19:22234800-22235800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:22234800-22235800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr19:22234800-22235800	Active TSS	Brain Substantia Nigra	brain
15	chr19:22234800-22235800	Active TSS	Psoas Muscle	Psoas
16	chr19:22234800-22235800	Active TSS	Rectal Smooth Muscle	rectum
17	chr19:22234800-22235800	Active TSS	HUVEC	blood vessel
18	chr19:22234800-22235800	Active TSS	Osteobl	bone
19	chr19:22234800-22236000	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr19:22234800-22236000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr19:22234800-22236000	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr19:22234800-22236000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr19:22234800-22236000	Active TSS	Fetal Intestine Large	intestine
24	chr19:22234800-22236000	Active TSS	Fetal Intestine Small	intestine
25	chr19:22234800-22236000	Active TSS	Fetal Kidney	kidney
26	chr19:22234800-22236000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr19:22234800-22236000	ZNF genes & repeats	Fetal Stomach	stomach
28	chr19:22234800-22236000	Active TSS	Left Ventricle	heart
29	chr19:22234800-22236000	Active TSS	Pancreas	Pancrea
30	chr19:22234800-22236000	Active TSS	Stomach Smooth Muscle	stomach
31	chr19:22234800-22236000	Active TSS	Thymus	Thymus
32	chr19:22234800-22236000	Active TSS	NHLF	lung
33	chr19:22234800-22236200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
34	chr19:22234800-22236200	Active TSS	Primary T cells from cord blood	blood
35	chr19:22234800-22236200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr19:22234800-22236200	Active TSS	Brain Angular Gyrus	brain
37	chr19:22234800-22236200	Active TSS	Brain Cingulate Gyrus	brain
38	chr19:22234800-22236200	Active TSS	Brain Hippocampus Middle	brain
39	chr19:22234800-22236200	Active TSS	Ovary	ovary
40	chr19:22234800-22236200	Active TSS	Right Atrium	heart
41	chr19:22234800-22236200	Active TSS	Right Ventricle	heart
42	chr19:22234800-22236400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr19:22234800-22236400	Active TSS	Brain Anterior Caudate	brain
44	chr19:22234800-22236400	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr19:22234800-22236400	Active TSS	NHEK	skin
46	chr19:22234800-22236600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr19:22235000-22235400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr19:22235000-22235400	Active TSS	Primary T cells fromperipheralblood	blood
49	chr19:22235000-22235600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr19:22235000-22235600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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