Variant report

Variant	rs41532045
Chromosome Location	chr1:75232857-75232858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:75230355..75233919-chr1:75236315..75238196,3	K562	blood:
2	chr1:75197358..75200500-chr1:75231674..75234194,4	K562	blood:
3	chr1:75232761..75233511-chr1:75590416..75590921,2	K562	blood:
4	chr1:75226788..75230241-chr1:75231524..75234649,3	K562	blood:

Variant related genes	Relation type
ENSG00000162623	Chromatin interaction
ENSG00000116791	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11538281	0.81[LWK][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095826	1.00[ASW][hapmap];0.83[MKK][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs17095828	1.00[EUR][1000 genomes]
rs17095873	1.00[EUR][1000 genomes]
rs28557039	0.87[AFR][1000 genomes]
rs56801414	1.00[EUR][1000 genomes]
rs56984812	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57299160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57413593	1.00[EUR][1000 genomes]
rs57891038	1.00[EUR][1000 genomes]
rs58387974	1.00[EUR][1000 genomes]
rs60099743	1.00[EUR][1000 genomes]
rs60307267	1.00[EUR][1000 genomes]
rs60486335	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61741065	0.89[AFR][1000 genomes]
rs6702642	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs72968192	1.00[EUR][1000 genomes]
rs72968194	1.00[EUR][1000 genomes]
rs72970024	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72970030	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72970039	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72970040	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72970042	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72970049	0.83[AFR][1000 genomes]
rs72973608	0.85[AFR][1000 genomes]
rs72973615	0.85[AFR][1000 genomes]
rs72973623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72973628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72973630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72973632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72973658	1.00[EUR][1000 genomes]
rs74093752	1.00[EUR][1000 genomes]
rs74095148	1.00[EUR][1000 genomes]
rs74095166	1.00[EUR][1000 genomes]
rs74095179	1.00[EUR][1000 genomes]
rs74095180	1.00[EUR][1000 genomes]
rs74095181	1.00[EUR][1000 genomes]
rs74095182	1.00[EUR][1000 genomes]
rs74095183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv830259	chr1:75089177-75241062	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1851105	chr1:75152186-75302921	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75206800-75233600	Weak transcription	Gastric	stomach
2	chr1:75207600-75233400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:75216000-75235200	Weak transcription	Right Ventricle	heart
4	chr1:75219200-75233400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:75221400-75238000	Weak transcription	A549	lung
6	chr1:75221600-75234600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:75221600-75237600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:75222200-75236000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:75223000-75235200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:75223200-75233400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:75223600-75235200	Weak transcription	Spleen	Spleen
12	chr1:75223800-75233600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:75224200-75233000	Weak transcription	Fetal Lung	lung
14	chr1:75225000-75235000	Weak transcription	Fetal Kidney	kidney
15	chr1:75225800-75233600	Weak transcription	Ovary	ovary
16	chr1:75226000-75237600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:75227800-75233200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:75227800-75235600	Weak transcription	HUVEC	blood vessel
19	chr1:75228000-75234400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr1:75228000-75235200	Weak transcription	Left Ventricle	heart
21	chr1:75228000-75235800	Weak transcription	Aorta	Aorta
22	chr1:75228400-75235000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:75228600-75234200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:75228800-75234600	Weak transcription	HMEC	breast
25	chr1:75230000-75234400	Weak transcription	NH-A	brain
26	chr1:75230200-75234800	Weak transcription	GM12878-XiMat	blood
27	chr1:75230800-75233000	Weak transcription	Fetal Intestine Large	intestine
28	chr1:75230800-75238400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:75231000-75233600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:75231000-75234600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:75231200-75233000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:75231200-75233200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:75231200-75233200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:75231200-75233200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:75231200-75233400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr1:75231200-75233600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr1:75231200-75233800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr1:75231200-75234000	Weak transcription	Adipose Nuclei	Adipose
39	chr1:75231200-75234000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr1:75231200-75234200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:75231200-75234200	Weak transcription	Brain Anterior Caudate	brain
42	chr1:75231200-75234200	Weak transcription	Fetal Muscle Leg	muscle
43	chr1:75231200-75234200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr1:75231200-75234400	Weak transcription	Fetal Heart	heart
45	chr1:75231200-75234600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:75231200-75234600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr1:75231200-75235200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr1:75231200-75235600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:75231200-75235800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr1:75231200-75237600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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