Variant report

Variant	rs74095180
Chromosome Location	chr1:75237010-75237011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75230355..75233919-chr1:75236315..75238196,3	K562	blood:
2	chr1:75236327..75237049-chr1:75669349..75670013,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11538281	1.00[EUR][1000 genomes]
rs17095826	1.00[EUR][1000 genomes]
rs17095828	1.00[EUR][1000 genomes]
rs17095873	1.00[EUR][1000 genomes]
rs41532045	1.00[EUR][1000 genomes]
rs56801414	1.00[EUR][1000 genomes]
rs56984812	1.00[EUR][1000 genomes]
rs57299160	1.00[EUR][1000 genomes]
rs57413593	1.00[EUR][1000 genomes]
rs57891038	1.00[EUR][1000 genomes]
rs58387974	1.00[EUR][1000 genomes]
rs60099743	1.00[EUR][1000 genomes]
rs60307267	1.00[EUR][1000 genomes]
rs60486335	1.00[EUR][1000 genomes]
rs6702642	1.00[EUR][1000 genomes]
rs72968192	1.00[EUR][1000 genomes]
rs72968194	1.00[EUR][1000 genomes]
rs72970024	1.00[EUR][1000 genomes]
rs72970030	1.00[EUR][1000 genomes]
rs72970039	1.00[EUR][1000 genomes]
rs72970040	1.00[EUR][1000 genomes]
rs72970042	1.00[EUR][1000 genomes]
rs72973623	1.00[EUR][1000 genomes]
rs72973628	1.00[EUR][1000 genomes]
rs72973630	1.00[EUR][1000 genomes]
rs72973632	1.00[EUR][1000 genomes]
rs72973658	1.00[EUR][1000 genomes]
rs74093480	1.00[AMR][1000 genomes]
rs74093752	1.00[EUR][1000 genomes]
rs74095137	1.00[AMR][1000 genomes]
rs74095148	1.00[EUR][1000 genomes]
rs74095153	1.00[AMR][1000 genomes]
rs74095164	1.00[AMR][1000 genomes]
rs74095166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095183	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv830259	chr1:75089177-75241062	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1851105	chr1:75152186-75302921	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75221400-75238000	Weak transcription	A549	lung
2	chr1:75221600-75237600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:75226000-75237600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:75230800-75238400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:75231200-75237600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:75231200-75237600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:75231200-75237800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:75231200-75245600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:75231200-75246000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:75231800-75237400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:75232200-75238000	Weak transcription	Liver	Liver

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