Variant report

Variant	rs41544813
Chromosome Location	chr6:31239297-31239298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:78)
CpG islands
(count:244)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:78 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31238890-31240219	GM10847	blood:	n/a	n/a
2	POLR2A	chr6:31234521-31240439	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:31239159-31240262	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr6:31239252-31239430	MCF10A-Er-Src	breast:	n/a	n/a
5	PAX5	chr6:31238704-31240248	GM12878	blood:	n/a	chr6:31240011-31240020
6	NR2F2	chr6:31239179-31239624	MCF-7	breast:	n/a	n/a
7	POLR2A	chr6:31233706-31240407	GM12891	blood:	n/a	n/a
8	POLR2A	chr6:31239082-31240214	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr6:31233597-31240425	GM12891	blood:	n/a	n/a
10	POU2F2	chr6:31238714-31240261	GM12891	blood:	n/a	n/a
11	POLR2A	chr6:31238364-31240493	GM12891	blood:	n/a	n/a
12	POLR2A	chr6:31238363-31240468	GM18526	blood:	n/a	n/a
13	SP1	chr6:31238851-31239439	GM12878	blood:	n/a	n/a
14	POLR2A	chr6:31233096-31241392	GM12892	blood:	n/a	n/a
15	POLR2A	chr6:31239211-31240222	MCF10A-Er-Src	breast:	n/a	n/a
16	YY1	chr6:31239227-31240100	HepG2	liver:	n/a	n/a
17	IRF1	chr6:31239065-31239403	K562	blood:	n/a	n/a
18	MTA3	chr6:31239075-31240682	GM12878	blood:	n/a	n/a
19	YY1	chr6:31239252-31239499	GM12891	blood:	n/a	n/a
20	POLR2A	chr6:31237159-31240295	GM12878	blood:	n/a	n/a
21	RFX5	chr6:31238270-31242325	SK-N-SH	brain:	n/a	chr6:31239918-31239927
22	POLR2A	chr6:31238511-31240336	GM12878	blood:	n/a	n/a
23	MXI1	chr6:31239226-31240392	IMR90	lung:	n/a	n/a
24	FOXM1	chr6:31239087-31240331	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:31233216-31241351	GM12892	blood:	n/a	n/a
26	POLR2A	chr6:31233203-31241373	GM12892	blood:	n/a	n/a
27	POLR2A	chr6:31232959-31241452	GM12892	blood:	n/a	n/a
28	POU2F2	chr6:31237191-31240338	GM12878	blood:	n/a	n/a
29	RELA	chr6:31239199-31240250	GM12891	blood:	n/a	n/a
30	POLR2A	chr6:31238407-31240486	GM12878	blood:	n/a	n/a
31	PAX5	chr6:31239276-31239686	GM12878	blood:	n/a	n/a
32	POLR2A	chr6:31232877-31241483	GM12878	blood:	n/a	n/a
33	PML	chr6:31239061-31240637	GM12878	blood:	n/a	chr6:31239924-31239932
34	CHD1	chr6:31239206-31240387	IMR90	lung:	n/a	n/a
35	POLR2A	chr6:31238888-31240289	GM12892	blood:	n/a	n/a
36	POLR2A	chr6:31239223-31240246	Hela-S3	cervix:	n/a	n/a
37	CREB1	chr6:31239283-31240185	HepG2	liver:	n/a	n/a
38	POLR2A	chr6:31239160-31239560	HCT-116	colon:	n/a	n/a
39	RFX5	chr6:31239207-31241280	IMR90	lung:	n/a	chr6:31239918-31239927
40	POLR2A	chr6:31238792-31240284	GM18951	blood:	n/a	n/a
41	POLR2A	chr6:31238898-31240323	GM19099	blood:	n/a	n/a
42	POLR2A	chr6:31239151-31240140	H1-hESC	embryonic stem cell:	n/a	n/a
43	STAT5A	chr6:31239124-31240567	GM12878	blood:	n/a	chr6:31240518-31240529 chr6:31240011-31240022
44	NFATC1	chr6:31239269-31240119	GM12878	blood:	n/a	n/a
45	MXI1	chr6:31239246-31239318	GM12878	blood:	n/a	n/a
46	POU2F2	chr6:31239129-31240355	GM12891	blood:	n/a	n/a
47	POLR2A	chr6:31239158-31240178	Hela-S3	cervix:	n/a	n/a
48	TCF3	chr6:31238770-31239971	GM12878	blood:	n/a	n/a
49	RFX5	chr6:31239284-31240996	H1-hESC	embryonic stem cell:	n/a	chr6:31239918-31239927
50	ELF1	chr6:31239192-31240190	GM12878	blood:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31239266-31239316	NH-A	brain:	n/a
2	chr6:31239266-31239316	ECC-1	luminal epithelium:	n/a
3	chr6:31239266-31239316	GM12878	blood:	n/a
4	chr6:31239295-31239345	AG04449	skin:	fetal
5	chr6:31239266-31239316	PANC-1	pancreas:	n/a
6	chr6:31239247-31239297	HCM	heart:	n/a
7	chr6:31239247-31239297	HEEpiC	esophagus:	n/a
8	chr6:31239266-31239316	RPTEC	kidney:	n/a
9	chr6:31239247-31239297	T-47D	breast:	n/a
10	chr6:31239295-31239345	NT2-D1	testis:	n/a
11	chr6:31239266-31239316	CMK	blood:	n/a
12	chr6:31239259-31239309	SKMC	muscle:	n/a
13	chr6:31239259-31239309	AG04449	skin:	fetal
14	chr6:31239295-31239345	H1-hESC	embryonic stem cell:	embryo
15	chr6:31239295-31239345	ECC-1	luminal epithelium:	n/a
16	chr6:31239295-31239345	HEEpiC	esophagus:	n/a
17	chr6:31239266-31239316	A549	lung:	n/a
18	chr6:31239266-31239316	Hela-S3	cervix:	n/a
19	chr6:31239295-31239345	HCM	heart:	n/a
20	chr6:31239247-31239297	HCT-116	colon:	n/a
21	chr6:31239266-31239316	BE2_C	brain:	n/a
22	chr6:31239247-31239297	HMEC	breast:	n/a
23	chr6:31239259-31239309	K562	blood:	n/a
24	chr6:31239259-31239309	BE2_C	brain:	n/a
25	chr6:31239247-31239297	Hela-S3	cervix:	n/a
26	chr6:31239266-31239316	AG04450	lung:	fetal
27	chr6:31239247-31239297	AG09319	gingival:	n/a
28	chr6:31239295-31239345	Caco-2	colon:	n/a
29	chr6:31239295-31239345	HEK293	kidney:	embryo
30	chr6:31239266-31239316	GM12891	blood:	n/a
31	chr6:31239247-31239297	HepG2	liver:	n/a
32	chr6:31239266-31239316	PrEC	prostate:	n/a
33	chr6:31239259-31239309	SK-N-MC	brain:	n/a
34	chr6:31239259-31239309	NHDF-neo	bronchial:	n/a
35	chr6:31239259-31239309	HCPEpiC	choroid plexus:	n/a
36	chr6:31239266-31239316	HEK293	kidney:	embryo
37	chr6:31239295-31239345	GM06990	blood:	n/a
38	chr6:31239259-31239309	HCT-116	colon:	n/a
39	chr6:31239295-31239345	NB4	blood:	n/a
40	chr6:31239266-31239316	HRCEpiC	kidney:	n/a
41	chr6:31239295-31239345	PFSK-1	brain:	n/a
42	chr6:31239266-31239316	ProgFib	skin:	n/a
43	chr6:31239266-31239316	HCM	heart:	n/a
44	chr6:31239247-31239297	HPAEpiC	pulmonary alveolar:	n/a
45	chr6:31239259-31239309	HL-60	blood:	n/a
46	chr6:31239295-31239345	AG09319	gingival:	n/a
47	chr6:31239266-31239316	NB4	blood:	n/a
48	chr6:31239259-31239309	T-47D	breast:	n/a
49	chr6:31239295-31239345	BJ	skin:	n/a
50	chr6:31239247-31239297	HIPEpiC	eye:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31238404..31240559-chr6:31321762..31324439,3	MCF-7	breast:
2	chr6:31238976..31240351-chr6:31324393..31325523,6	HCT-116	colon:
3	chr6:29855138..29856405-chr6:31238835..31239948,4	HCT-116	colon:

No data

Variant related genes	Relation type
USP8P1	TF binding region
HLA-C	TF binding region
USP8P1	CpG island
HLA-C	CpG island
ENSG00000271581	Chromatin interaction
ENSG00000206341	Chromatin interaction
ENSG00000230521	Chromatin interaction
ENSG00000234745	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1049724	1.00[AMR][1000 genomes]
rs17191650	1.00[AMR][1000 genomes]
rs17198168	1.00[AMR][1000 genomes]
rs17198713	0.81[EUR][1000 genomes]
rs28373246	0.87[EUR][1000 genomes]
rs41560121	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41562921	1.00[AMR][1000 genomes]
rs56714080	0.87[EUR][1000 genomes]
rs6918237	0.87[EUR][1000 genomes]
rs6919409	0.87[EUR][1000 genomes]
rs73728482	1.00[AMR][1000 genomes]
rs73728489	1.00[AMR][1000 genomes]
rs73728776	0.81[EUR][1000 genomes]
rs73728777	0.81[EUR][1000 genomes]
rs73728778	0.81[EUR][1000 genomes]
rs73728783	0.81[EUR][1000 genomes]
rs73728785	0.81[EUR][1000 genomes]
rs73728796	0.81[EUR][1000 genomes]
rs73728799	0.81[EUR][1000 genomes]
rs73728802	0.81[EUR][1000 genomes]
rs73730013	0.81[EUR][1000 genomes]
rs73730014	0.81[EUR][1000 genomes]
rs73730325	1.00[AMR][1000 genomes]
rs73730350	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:68 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
8	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
9	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
10	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
13	nsv1034391	chr6:31131121-31279595	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
15	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
16	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
17	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
18	esv32635	chr6:31141504-31250618	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
19	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
20	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
21	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
22	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
23	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
24	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
25	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
26	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
27	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
28	nsv966677	chr6:31205370-31256620	Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	esv5999	chr6:31206410-31285897	Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	esv3373199	chr6:31206451-31287335	Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
32	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
33	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
34	esv6375	chr6:31210228-31287149	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	nsv884142	chr6:31210265-31239855	Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
36	esv3475032	chr6:31210396-31321602	Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
37	esv3475033	chr6:31210396-31321602	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
38	esv3494518	chr6:31213606-31289031	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	esv3494520	chr6:31213606-31289031	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
40	esv2422229	chr6:31215949-31322934	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	esv3328153	chr6:31230846-31327330	Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
42	esv2503823	chr6:31233039-31319362	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
43	esv35158	chr6:31233510-31318221	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
44	nsv525255	chr6:31234381-31241032	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
45	esv3475034	chr6:31234427-31327274	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
46	esv3475035	chr6:31234427-31327274	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
47	esv5788	chr6:31234471-31320006	ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
48	esv3398089	chr6:31235473-31240071	Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
49	esv3486666	chr6:31235773-31240771	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
50	esv3486667	chr6:31235773-31240771	Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31236200-31239800	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:31236600-31239800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
3	chr6:31236600-31240400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:31236800-31239800	Transcr. at gene 5' and 3'	Colonic Mucosa	Colon
5	chr6:31237000-31239800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
6	chr6:31238200-31240400	Active TSS	Brain Anterior Caudate	brain
7	chr6:31238400-31240200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:31238400-31240400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:31238400-31240400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:31238400-31240400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:31238400-31241000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:31238400-31241000	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr6:31238600-31240400	Active TSS	Small Intestine	intestine
14	chr6:31238600-31240400	Active TSS	HSMM	muscle
15	chr6:31238600-31240400	Active TSS	HSMMtube	muscle
16	chr6:31238600-31240600	Active TSS	H9 Cell Line	embryonic stem cell
17	chr6:31238600-31240600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
18	chr6:31238600-31240600	Active TSS	Right Ventricle	heart
19	chr6:31238600-31240800	Active TSS	Psoas Muscle	Psoas
20	chr6:31238600-31241000	Active TSS	Right Atrium	heart
21	chr6:31238800-31239400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:31238800-31239400	Weak transcription	Stomach Mucosa	stomach
23	chr6:31238800-31240000	Active TSS	Muscle Satellite Cultured Cells	--
24	chr6:31238800-31240000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:31238800-31240000	Active TSS	NHEK	skin
26	chr6:31238800-31240200	Active TSS	H1 Cell Line	embryonic stem cell
27	chr6:31238800-31240200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:31238800-31240200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:31238800-31240200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:31238800-31240200	Active TSS	Liver	Liver
31	chr6:31238800-31240200	Active TSS	Brain Angular Gyrus	brain
32	chr6:31238800-31240200	Active TSS	Brain Germinal Matrix	brain
33	chr6:31238800-31240200	Active TSS	Fetal Intestine Large	intestine
34	chr6:31238800-31240400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:31238800-31240400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:31238800-31240400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:31238800-31240400	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:31238800-31240400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:31238800-31240400	Active TSS	Colon Smooth Muscle	Colon
40	chr6:31238800-31240400	Active TSS	Fetal Kidney	kidney
41	chr6:31238800-31240400	Active TSS	Ovary	ovary
42	chr6:31238800-31240400	Active TSS	Placenta Amnion	Placenta Amnion
43	chr6:31238800-31240400	Active TSS	A549	lung
44	chr6:31238800-31240800	Active TSS	Aorta	Aorta
45	chr6:31238800-31240800	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr6:31239000-31239800	Active TSS	Fetal Muscle Leg	muscle
47	chr6:31239000-31239800	Active TSS	Placenta	Placenta
48	chr6:31239000-31240000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:31239000-31240000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:31239000-31240000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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